Locus 1405

Sequence ID X_DroMel_CAF1
Location 4,230,044 – 4,230,135
Length 91
Max. P 0.695398
window2242

overview

Window 2

Location 4,230,044 – 4,230,135
Length 91
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 74.27
Mean single sequence MFE -20.67
Consensus MFE -9.33
Energy contribution -11.89
Covariance contribution 2.56
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.45
SVM decision value 0.34
SVM RNA-class probability 0.695398
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4230044 91 + 22224390
-ACCCAUUGCCAGUGUGGAUCCAUUUUUUUUUUGUCAGUUUAUUUAUUGUUGCUCCAUUUUU-------AGUAGCUGACAAGACAAAUAUGCCCAAGGC
-.......(((....(((...(((.(((.(((((((((((.......((......)).....-------...))))))))))).))).))).))).))) ( -19.36)
>DroSec_CAF1 17284 89 + 1
-ACC-UUUGCCAUUGUGGAUCUAUUUU-UUUUUGUCAGUUCAUUUAUUGCUGCUCCAUUUUU-------AGUAGCUGACAAGACAAAUAGGCCCAAGGC
-...-...(((.(((.((.(((((((.-.((((((((...........((((((........-------)))))))))))))).))))))))))))))) ( -25.20)
>DroSim_CAF1 23010 88 + 1
-ACC-UUUGCCAUUGUGGAUCUAUUUU--UUUUGUCAGUUCAUUUAUUGCUGCUCCAUUUUU-------AGUAGCUGACAAGACAAAUAGGCCCAAGGC
-...-...(((.(((.((.(((((((.--((((((((...........((((((........-------)))))))))))))).))))))))))))))) ( -27.20)
>DroYak_CAF1 16713 79 + 1
G----------A-UAAAAAUCCAUUUU--UUCUGUCAGUUUAUUUAUUGCUGCUCCAUUUUU-------AGUAGCUGACAAGACAAACAGGCCCAAGGC
.----------.-..............--..((((..((((.......((((((........-------)))))).....))))..))))(((...))) ( -13.10)
>DroAna_CAF1 19505 92 + 1
---A-UCUGUAUCUGUGUAUCUGUUU---CUGUAUCUGUAUCUCGGUAACUGCUCUACUUUUUUGUGUCGCUAGCUGACAGGACAAACAGGCCCAAGGG
---.-.......((.((..((((((.---.(((.((((....(((((....((..(((......)))..))..))))))))))))))))))..)).)). ( -18.50)
>consensus
_ACC_UUUGCCAUUGUGGAUCUAUUUU__UUUUGUCAGUUUAUUUAUUGCUGCUCCAUUUUU_______AGUAGCUGACAAGACAAAUAGGCCCAAGGC
...............(((.(((((((...(((((((((((................................))))))))))).))))))).))).... ( -9.33 = -11.89 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:40 2006