| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,227,580 – 4,227,672 |
| Length | 92 |
| Max. P | 0.678415 |
| Location | 4,227,580 – 4,227,672 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 88.85 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -16.99 |
| Energy contribution | -18.77 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4227580 92 - 22224390 UACUUACAUUCAAAUAAACUGUG-------AAUACUGUACACUCUUUUAGAAUGAAUGAUUCAUUUGCCCUUAUGGAUGCAUUCAUGCAGAUGUCCAAG ......((((((..((((..(((-------.........)))...))))...))))))...(((((((....(((....)))....)))))))...... ( -15.40) >DroSec_CAF1 14948 98 - 1 UACUUACAUUCAUAUAAGCUGUGCAGUAAAAAUACUGUACACUCUUUUAGAAAGAAUGCUUCAUUUC-GCCUAUGGAUGCAUUCAUGCAGGUGUCCAAG (((((.(((((.((.(((.(((((((((....)))))))))..))).))))).(((((((((((...-....))))).)))))).)).)))))...... ( -26.00) >DroSim_CAF1 20304 98 - 1 UACUUACAUUCAUAUAAACUGUGCAGUAGAAAUACUGUACACUCUUUUAGAAAGAAUGCUUCAUUUC-GCCUAUGGAUGCAUUCAUGCAGAUGUCCAAG .....(((((..(((....(((((((((....)))))))))............(((((((((((...-....))))).)))))))))..)))))..... ( -26.50) >consensus UACUUACAUUCAUAUAAACUGUGCAGUA_AAAUACUGUACACUCUUUUAGAAAGAAUGCUUCAUUUC_GCCUAUGGAUGCAUUCAUGCAGAUGUCCAAG .....(((((.........(((((((((....)))))))))............(((((((((((........))))).)))))).....)))))..... (-16.99 = -18.77 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:37 2006