Locus 14

Sequence ID X_DroMel_CAF1
Location 30,127 – 30,240
Length 113
Max. P 0.593219
window16

overview

Window 6

Location 30,127 – 30,240
Length 113
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.52
Mean single sequence MFE -28.24
Consensus MFE -19.70
Energy contribution -21.82
Covariance contribution 2.12
Combinations/Pair 1.12
Mean z-score -2.04
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.593219
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 30127 113 + 22224390
ACUGUAGUCCACUUUUCGAAAGAAUAUCAUCCCGGGAAUCAAUGUUAUCUUUUCUAGAUAAACUGAUGAUGCGUUUACUUUUACUACUUCGCAUUACGCUUAUCGACGAC-------GAC
......(((.....(((....)))........(((..((((...((((((.....))))))..))))((((((................)))))).......)))..)))-------... ( -19.19)
>DroSec_CAF1 17409 117 + 1
UCUUUAGGCCACUUUUCGAAAGAAUAUCAUCCCG-AACUCGAUAUUAUCUUCUCUGGAUAAAGUGAUAAUGCGUUUACUUUUAUUA--UCGCAUUACGCUUAUCGACGGGGACUGGAGAC
(((((((.......(((....))).....(((((-...((((((((((((.....))))))((((.(((((((.............--.)))))))))))))))))))))).))))))). ( -36.24)
>DroSim_CAF1 17160 119 + 1
UCUUUAGGCCACUUUUCGAAAGAAUAUCAUCCCG-AACUCGAUAUUAUUUUCUCUGGAUAAACUGAUAAUGCGUUUACUUUUACUACUUCGCAUUACGCCUAUCGACGGGGACUGGAGAC
(((((((.......(((....))).....(((((-...((((((((((((.....)))))).....(((((((................)))))))....))))))))))).))))))). ( -29.29)
>consensus
UCUUUAGGCCACUUUUCGAAAGAAUAUCAUCCCG_AACUCGAUAUUAUCUUCUCUGGAUAAACUGAUAAUGCGUUUACUUUUACUACUUCGCAUUACGCUUAUCGACGGGGACUGGAGAC
.((((((.......(((....))).....(((((....((((((((((((.....)))))).....(((((((................)))))))....))))))))))).)))))).. (-19.70 = -21.82 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006