Locus 1395

Sequence ID X_DroMel_CAF1
Location 4,195,895 – 4,195,993
Length 98
Max. P 0.994096
window2226

overview

Window 6

Location 4,195,895 – 4,195,993
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 88.04
Mean single sequence MFE -29.54
Consensus MFE -23.88
Energy contribution -24.04
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -2.71
Structure conservation index 0.81
SVM decision value 2.45
SVM RNA-class probability 0.994096
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4195895 98 + 22224390
UAUAUGUUCCAUA-------UACCAGGGUGUAUAUAUAUAAGGUUGGAGGCAGAAUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA
(((((((...(((-------(((....))))))))))))).....((((((.((.(((((((..((((........))))..)))))))))))))))........ ( -28.10)
>DroSec_CAF1 29014 92 + 1
UAUAUG--CCAUA-------UACCGGGGUGUAU----AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA
((((((--((...-------......)))))))----).....(((((((((.((.((((((..((((........))))..)))))))))))))))))...... ( -30.40)
>DroSim_CAF1 17653 92 + 1
UAUAUG--CCAUA-------UACCGGGGUGUAU----AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA
((((((--((...-------......)))))))----).....(((((((((.((.((((((..((((........))))..)))))))))))))))))...... ( -30.40)
>DroEre_CAF1 29659 90 + 1
--UAUG--CCAUU-------UACCAGGGAGUAU----AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGCCGUCUCCUAAAUGAA
--....--.((((-------(....(((((...----....(((((.((((((((.((((((........)))))).)))))))).)))))..)))))))))).. ( -29.20)
>DroYak_CAF1 32428 95 + 1
--UAUG--CCAUUUACCAUUUACCAGGGAGUAC----AUAAGGUGGGAGGCGGACUGAUAGAAUGACGUAU--GUUUGUUUGUCUGUCGCCGUCUCCUAAAUGAA
--....--.((((((.....((((..(.....)----....))))((((((((...((((((..((((...--...))))..)))))).)))))))))))))).. ( -29.60)
>consensus
UAUAUG__CCAUA_______UACCAGGGUGUAU____AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA
...........................................((((((((((...((((((..((((........))))..)))))).))))))))))...... (-23.88 = -24.04 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:20 2006