| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,180,351 – 4,180,460 |
| Length | 109 |
| Max. P | 0.936723 |
| Location | 4,180,351 – 4,180,460 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 69.30 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -10.52 |
| Energy contribution | -10.43 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.936723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4180351 109 + 22224390 -G-CUACGUGCACAUACCUACCACAUUAGACGCUCGUCUAAUGUUGGCGUCAUUAGCCGCGCCACCCAUCC--AAAUGUAAAAAAAAAAGAACACCCCUUUUCCUUGACCUAC---- -(-(.....))((((.......(((((((((....)))))))))((((((........)))))).......--..))))......(((((.......)))))...........---- ( -22.60) >DroPse_CAF1 19575 88 + 1 UG-CUACGUGCACAUA-------CAUUAAACGGCCGCCUAAUGUCGGCGUCAUUAGCCGCGCCACCAACACCGACAC--CGACAAC-------ACCCA--------GGCCCAC---- ((-(.....)))....-------........((((......((((((.(((.....................))).)--)))))..-------.....--------))))...---- ( -21.72) >DroSec_CAF1 12678 105 + 1 GG-CUACGUGCACAUACAUA---CAUUACACGCUCGCCUAAUGUUGGCCUCAUUAGCCGCUCCACCCAUCG--AAAU--AAAAAAAAAAGAGCACCCCUUUUCCUUGACCUAC---- ((-(((((((..........---.....))))...(((.......))).....)))))((((.........--....--..........))))....................---- ( -16.56) >DroEre_CAF1 12833 93 + 1 -G-CUACGCGCACAUA-------CAUUAGACACUCGCCUAAUGUUGGCGUCAUUAGCCGCGCCACCCAUCC--AAAA--AGAAAAAAA-------CCCUUUUCCUUGACCUAC---- -.-....((((....(-------((((((........))))))).(((.......))))))).........--....--.(((((...-------...)))))..........---- ( -19.00) >DroAna_CAF1 19750 91 + 1 -GCCUACGUGCACAUA-------CAUUAAAUGUCCGCCUAAUGUUGGCGUCAUUAGCCGCGCCACCAACCA---A------GGAAAAACUCACA---------CUUGGCCUAAACUC -......(((.((((.-------......)))).)))....((.((((((........)))))).)).(((---(------(............---------)))))......... ( -18.70) >DroPer_CAF1 19279 88 + 1 UG-CUACGUGCACAUA-------CAUUAAACGGCCGCCUAAUGUCGGCGUCAUUAGCCGCGCCACCAACACCGACAC--CGACAAC-------ACCCA--------GGCCCAC---- ((-(.....)))....-------........((((......((((((.(((.....................))).)--)))))..-------.....--------))))...---- ( -21.72) >consensus _G_CUACGUGCACAUA_______CAUUAAACGCCCGCCUAAUGUUGGCGUCAUUAGCCGCGCCACCAACCC__AAAC__AGAAAAAAA_____ACCCC_____CUUGACCUAC____ .......((((............(((((..(....)..)))))..(((.......)))))))....................................................... (-10.52 = -10.43 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:14 2006