Locus 1389

Sequence ID X_DroMel_CAF1
Location 4,171,159 – 4,171,259
Length 100
Max. P 0.617935
window2214

overview

Window 4

Location 4,171,159 – 4,171,259
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 90.21
Mean single sequence MFE -18.94
Consensus MFE -13.36
Energy contribution -13.84
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -2.09
Structure conservation index 0.71
SVM decision value 0.17
SVM RNA-class probability 0.617935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4171159 100 - 22224390
UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAAUACAUAUUUCCGGAACUGGGAAUAU---GCAUAUGCACUAUCUAUU
....((((((......(((((((((((....)))))))....)))).............((((((((((....)))))))))---)..))))))......... ( -20.50)
>DroSec_CAF1 3982 103 - 1
UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAAUACAUAUUUCCGGAACUGGGAAUAUUGUACAUAUGCACUAUCUAUU
....((((((......(((((((((((....)))))))....))))...........((((((((((((....)))))))).))))..))))))......... ( -19.60)
>DroSim_CAF1 4014 103 - 1
UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACCAUACAUAUUUCCGGAACUGGGAAUAUUGUACAUAUGCACUAUCUAUU
....((((((......(((((((((((....)))))))....))))...........((((((((((((....)))))))).))))..))))))......... ( -19.60)
>DroEre_CAF1 3845 92 - 1
UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAA----UAUUUCCGGAACUGGAAAU-------AUAUUCGUUAUCAAUU
................(((((((((((....)))))))....))))...((((((.(----((((((((....)))))))-------))....)))))).... ( -18.00)
>DroYak_CAF1 3853 98 - 1
UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAA----UAUUUCCGGAACUGGGAAUAC-GAGUAUACUCACUAUCUAUU
................(((((((((((....)))))))....))))..(((((....----((((((((....)))))))).-(((....)))..)))))... ( -17.00)
>consensus
UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAAUACAUAUUUCCGGAACUGGGAAUAU_G_ACAUAUGCACUAUCUAUU
....((((((......(((((((((((....)))))))....))))...............((((((((....)))))))).......))))))......... (-13.36 = -13.84 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:06 2006