Locus 1388

Sequence ID X_DroMel_CAF1
Location 4,169,892 – 4,169,986
Length 94
Max. P 0.861413
window2213

overview

Window 3

Location 4,169,892 – 4,169,986
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 97.02
Mean single sequence MFE -15.40
Consensus MFE -13.92
Energy contribution -13.88
Covariance contribution -0.04
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.90
SVM decision value 0.83
SVM RNA-class probability 0.861413
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4169892 94 + 22224390
CCUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAAGCGAACGCCGUCGCACACUCAUCGCACCCACACAAACGCAC
..(((((((((((......)).)))))..........................((((......))))............))))........... ( -13.60)
>DroSec_CAF1 2681 94 + 1
CCCGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC
..(((((.(((((.....................((((.........)))).(((....)))...))))).)).)))................. ( -15.90)
>DroSim_CAF1 2720 94 + 1
CCCGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC
..(((((.(((((.....................((((.........)))).(((....)))...))))).)).)))................. ( -15.90)
>DroEre_CAF1 2576 94 + 1
CAUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAGCUCAC
.(((((..(((((.....................((((.........)))).(((....)))...))))))))))................... ( -15.70)
>DroYak_CAF1 2660 94 + 1
CAUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC
.(((((..(((((.....................((((.........)))).(((....)))...)))))))))).((............)).. ( -15.90)
>consensus
CCUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC
..(((((.(((((.....................((((.........)))).(((....)))...))))).)).)))................. (-13.92 = -13.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:05 2006