Locus 1386

Sequence ID X_DroMel_CAF1
Location 4,168,060 – 4,168,179
Length 119
Max. P 0.862992
window2211

overview

Window 1

Location 4,168,060 – 4,168,179
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 86.83
Mean single sequence MFE -28.70
Consensus MFE -22.17
Energy contribution -22.80
Covariance contribution 0.63
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.77
SVM decision value 0.84
SVM RNA-class probability 0.862992
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4168060 119 - 22224390
UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAACCAACUCGUAAAAAAAAUAUUUAAAAGGGAAAACAAGAGCAGGGCAAGGCGAAAAGGAGUUACAGAAAGCGCGUGUGGC
.........((((((((((((..(((.....)))((....)).))))((((...............(......)....((........)).........)))).......)))))))). ( -29.40)
>DroSec_CAF1 899 119 - 1
UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAUCCAACUCGUAAAAAAUAUAUUUAAAAGGGAAAACAAGAGCAGCGCAAUGCGAAAAGGAGUUACAAAAAGCAAGUGUGGC
((((((((.((....((((((.(((...((((....)))))))))))))......((....))....)).))))))))((.((((..(((.....(......).....))).)))).)) ( -26.80)
>DroSim_CAF1 888 119 - 1
UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAACCAACUCGUAAAAAAAAUAUUUAAAAGGGAAAACAAGAGCAGCGCAAGGCGAAAAGGAGUUACAAAGAGCAAGUGUGGC
((((((((.((....((((((..(((.....)))((....)).)))))).(((......))).....)).))))))))((.((((...((.....(......).....))..)))).)) ( -29.90)
>DroYak_CAF1 898 105 - 1
UCUUGUUUACCACGCGCUAGUGCGAGAAAUUCUUGGGAAACCAACUCAAAAA-----------AAAAGGAAAACAAGAG---CGCAAGGCGAAAAGGAGUGACAAAAAGCGCGUGUGGC
.........((((((((..(((((((......((((....))))))).....-----------....(.....)....)---)))...((.....(......).....)))))))))). ( -28.70)
>consensus
UCUUGUUUACCACGCGCGAGUAUGGGAAAUUCUCGGGAAACCAACUCGUAAAAAAAAUAUUUAAAAGGGAAAACAAGAGCAGCGCAAGGCGAAAAGGAGUUACAAAAAGCAAGUGUGGC
((((((((.((....((((((..(((.....)))((....)).))))))..................)).))))))))....((((..((.....(......).....))...)))).. (-22.17 = -22.80 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:03 2006