Locus 1384

Sequence ID X_DroMel_CAF1
Location 4,156,115 – 4,156,235
Length 120
Max. P 0.860005
window2208

overview

Window 8

Location 4,156,115 – 4,156,235
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -39.47
Consensus MFE -19.71
Energy contribution -21.73
Covariance contribution 2.02
Combinations/Pair 1.25
Mean z-score -2.59
Structure conservation index 0.50
SVM decision value 0.82
SVM RNA-class probability 0.860005
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4156115 120 - 22224390
ACCUAUAUACAUGCCGUUCCAAAUUGGGCUGUCAGUCGCCUGUAAUUGUAUGGGUCCGAUUGCACAGGGAGAAAUCUUGGUCAGUCUGCCAUUUGAUGGAGCAUCAAGUGGUGUAAAUGC
(((((((((..(((...........((((........)))))))..)))))))))..(((((.((..(((....)))..))))))).(((((((((((...)))))))))))........ ( -36.50)
>DroSim_CAF1 14216 116 - 1
ACCU----ACAUGCAGCCCCAAAUUGGGCUGUCAGUUGUCUGUAAUUGUGUGGGUUCGACUGCACAGGCAGAAAUCUUGGGCAGUCUGCCAUUUGAUGGAACAUCAAGUGGUGUACUUGC
((((----(((((((((((......)))))))(((....))).....))))))))..((((((.((((.(....))))).)))))).(((((((((((...)))))))))))........ ( -49.80)
>DroYak_CAF1 39955 106 - 1
ACCU----AUAUACAGCCCCAAAUUGGGCUGUCAGUUAUCCGUAAUUGUGUGAGUCUGGCUGCACGGUGAGAAAUCUUG--CAGGUUUUCA---GAUUGAAUAUGAAG-----GAAUUGG
....----....(((((((......)))))))((((..(((....(..(((.(((((((..((...(..((....))..--)..))..)))---))))..)))..).)-----)))))). ( -32.10)
>consensus
ACCU____ACAUGCAGCCCCAAAUUGGGCUGUCAGUUGUCUGUAAUUGUGUGGGUCCGACUGCACAGGGAGAAAUCUUGG_CAGUCUGCCAUUUGAUGGAACAUCAAGUGGUGUAAUUGC
.........((((((((((......)))))))((((((....)))))).))).....(((((..((((.(....)))))..))))).((((((((((.....))))))))))........ (-19.71 = -21.73 +   2.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:00 2006