| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,155,319 – 4,155,425 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 4,155,319 – 4,155,425 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.35 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -26.04 |
| Energy contribution | -25.27 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4155319 106 - 22224390 --CACUUUGCAUCUCGCCGUCUUCAUUA-GGAGAAAAACGCAAACUAAGUGAGUAAUAUGAGCCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGG----------- --..........((((((.(((((....-)))))...((((...((((((((((.......((((....))))((((.....)))))))).)))))).)))).))))))----------- ( -32.00) >DroSim_CAF1 13435 108 - 1 CCCACUUUGCAUCCCAUCGUCUUCAUUA-GGAGAAAAACGCAAACUAAGUGAGUAAUAUGAGCCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGU----------- ((((((((((.........(((((....-))))).....)))))((((((((((.......((((....))))((((.....)))))))).))))))...)))))....----------- ( -30.64) >DroYak_CAF1 39158 111 - 1 --C-------AGACCAUCGCCUUCACUAAUGAGAAUAACGCAUACUAAGUGAGUAAUAGGAGGCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGUAGUUGUUGGGG --.-------..((((((((((((((...........((((...((((((............))))))...)))))))))).))((.(((......))).)).))))))........... ( -29.90) >consensus __CACUUUGCAUCCCAUCGUCUUCAUUA_GGAGAAAAACGCAAACUAAGUGAGUAAUAUGAGCCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGU___________ ............((((((..((((((...........((((...(((((..............)))))...))))))))))..(((.(((......))).)))))))))........... (-26.04 = -25.27 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:59 2006