Locus 1381

Sequence ID X_DroMel_CAF1
Location 4,120,164 – 4,120,284
Length 120
Max. P 0.756940
window2203

overview

Window 3

Location 4,120,164 – 4,120,284
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -41.70
Consensus MFE -34.25
Energy contribution -34.37
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.82
SVM decision value 0.49
SVM RNA-class probability 0.756940
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4120164 120 - 22224390
UCAAAUUACCUCGAGUGCACUUGGCGCUUUUUCACAGUCAGAGUUGGAGUCCCAGGAUUUGGCUCGGGAUCUGGCUGGGCAUCGGGUUCUGGGCCCAGCAAUUAAGCUUGUGUCGAGUGU
................(((((((((((.......(((((.((((..((.((....))))..))))..)).)))(((((((.((((...)))))))))))..........))))))))))) ( -47.30)
>DroSim_CAF1 7071 120 - 1
UCAAAUUACCACGAGUGCACUUGGCGCUUUUUCACAGUCAGUGUUGGAGUCCCAGGAUUUGGCUCGGGAUCUGGGUGGGCAUCGGGUUCUGGGCCCAGCAAUUAAGCUUGUGUCGAGUGU
.....((..(((((((...(((((.(((((..(((.....)))..))))).)))))....((((((((((((((.......))))))))))))))..........)))))))..)).... ( -43.70)
>DroYak_CAF1 8295 95 - 1
UCAAAUUACCUCGAGUGCACUUGGCGCU-------------------------AGGAUUUGGCUCGGGAUCUGGCUGGGCAUCGGGUUUUGGUCCCAGCAAUUAAGCUUGUGUCGAGUGU
................(((((((((((.-------------------------(((.....(((.((((((.((((.(....).))))..))))))))).......)))))))))))))) ( -34.10)
>consensus
UCAAAUUACCUCGAGUGCACUUGGCGCUUUUUCACAGUCAG_GUUGGAGUCCCAGGAUUUGGCUCGGGAUCUGGCUGGGCAUCGGGUUCUGGGCCCAGCAAUUAAGCUUGUGUCGAGUGU
................(((((((((((.................................((((((((((((((.......)))))))))))))).(((......))).))))))))))) (-34.25 = -34.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:55 2006