| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,119,660 – 4,119,780 |
| Length | 120 |
| Max. P | 0.682623 |
| Location | 4,119,660 – 4,119,780 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.01 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4119660 120 - 22224390 AAAAAAUGGGGAAAAUGCGCAAAAAACAGGAACUCGAAUCGGAGCACACGCUGGGGAAUCGAGUUGACAUAUUCAUAUGGGGGCCGCAGGACCAACUCUCCACCUCCUACUCCAUCCCCC .......(((((...(((((..........(((((((.((..(((....)))...)).)))))))..((((....))))...).))))(((.......))).............))))). ( -29.30) >DroSim_CAF1 6562 120 - 1 AAAAAGGGGGAAAAAUGCGCAAAAAACAGAAACUCGAAUCGGAGCACACGCCAGGGAAUCGAGUUGACAUAUUCAUAUGGGGGACGCAGUACCAACUCUCCACCUUCUACUCCAUCCCCC .....((((((...................(((((((.((.(.((....)))...)).))))))).............((((((.(.(((....))))))).))).........)))))) ( -29.10) >DroYak_CAF1 7839 96 - 1 --AAAAGGGAAAAAGUGCGAAAAAAAC---AACUCGAUUCGGAGCACACGCCCGGGAAUCGAGUUGACAUAUUCAUAUGGGGGACG---------------ACCUU----ACCGUUCCCC --................(((.....(---((((((((((((.((....))))..))))))))))).....)))....((((((((---------------.....----..)))))))) ( -33.20) >consensus AAAAAAGGGGAAAAAUGCGCAAAAAACAG_AACUCGAAUCGGAGCACACGCCAGGGAAUCGAGUUGACAUAUUCAUAUGGGGGACGCAG_ACCAACUCUCCACCUUCUACUCCAUCCCCC ......(((((...................(((((((.((...((....))....)).))))))).............(((((...................))))).......))))). (-19.23 = -19.01 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:54 2006