Locus 1377

Sequence ID X_DroMel_CAF1
Location 4,117,201 – 4,117,321
Length 120
Max. P 0.911026
window2196

overview

Window 6

Location 4,117,201 – 4,117,321
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.86
Mean single sequence MFE -30.48
Consensus MFE -21.55
Energy contribution -22.30
Covariance contribution 0.75
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.71
SVM decision value 1.07
SVM RNA-class probability 0.911026
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4117201 120 - 22224390
GUUCUACUUUCAUUCCGGUCGAGGCCAGCUGCGUGGCAGAGUCGUUGACUUUCCUCUCCUCUCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCCAAAUUGUAGAUACUUUACAA
(((((((......((.(((((((((((......))))((((((...))))))........))))))).))(((.....)))(((((((((.....))))))))).))))).))....... ( -39.70)
>DroSec_CAF1 8332 109 - 1
GUUCCACUUUCAUUCCGGUCGAGGCCAGCUGCAUGGCAGAGUCGUUGCCUUUCCUCUCC--UCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCUAAAUUGUAGAU---------
........(((.(((.((((((((..((......(((((.....)))))....))..))--)))))).))).)))((((..(((((((((.....))))))))).))))..--------- ( -32.80)
>DroSim_CAF1 3736 109 - 1
GUUCCACUUUCAUUCCGGUCGAGGCCAGCUGCAUGGCAGAGUCGUUGACUUUCCUCUCC--UCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCUAAAUUGUAGAU---------
........(((.(((.(((((((((((......))))((((((...))))))......)--)))))).))).)))((((..(((((((((.....))))))))).))))..--------- ( -34.00)
>DroYak_CAF1 3857 97 - 1
CUUUU-----------------------CUGCGACGCAGAGUCGUUGACUUUCCUCUUCUCUCUACUCGAUGGAAUUGCCCAUUUGACUAUUUUCUAGCUAAAUUGUAGAUAUUUUUCGA
....(-----------------------(.(((((.....))))).)).............((((((((((((......))).))))(((.....))).......))))).......... ( -15.40)
>consensus
GUUCCACUUUCAUUCCGGUCGAGGCCAGCUGCAUGGCAGAGUCGUUGACUUUCCUCUCC__UCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCUAAAUUGUAGAU_________
................(((....)))..(((((.(((((((((...))))((((((............)))))).))))).(((((((((.....))))))))))))))........... (-21.55 = -22.30 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:48 2006