Locus 1375

Sequence ID X_DroMel_CAF1
Location 4,115,832 – 4,115,952
Length 120
Max. P 0.984407
window2194

overview

Window 4

Location 4,115,832 – 4,115,952
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -46.60
Consensus MFE -44.05
Energy contribution -44.55
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.77
Structure conservation index 0.95
SVM decision value 1.97
SVM RNA-class probability 0.984407
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4115832 120 - 22224390
GCGGGGCUCGUCGGCGGCACAGAACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAU
((.(((((((....))((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).)))))).)))))..(((((.....))))).)).......... ( -45.80)
>DroSec_CAF1 7188 120 - 1
GCAGGGCUCGUCGGCAGCACAGGACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAC
.....(((....))).((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).))))))..((((...(((.....)))..)))).......... ( -47.00)
>DroSim_CAF1 2568 120 - 1
GCAGGGCUCGUCGGCAGCACAGGACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAC
.....(((....))).((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).))))))..((((...(((.....)))..)))).......... ( -47.00)
>DroYak_CAF1 2501 120 - 1
GCAGGGCUGGUCGGCGGCACAGGACUCGGGGCUCUGGGUUGUGCAACUCACAGGACUACAUGCUCACAGCCGCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCCGAAGAAUAC
..........(((((.((((((.(((((.((((.(((((((((...(.....)...)))).))))).)))).))))).))))))........(((((.....))))).)))))....... ( -46.60)
>consensus
GCAGGGCUCGUCGGCAGCACAGGACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAC
.....(((....))).((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).))))))..((((...(((.....)))..)))).......... (-44.05 = -44.55 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:46 2006