Locus 1369

Sequence ID X_DroMel_CAF1
Location 4,100,451 – 4,100,558
Length 107
Max. P 0.975228
window2177

overview

Window 7

Location 4,100,451 – 4,100,558
Length 107
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 89.26
Mean single sequence MFE -28.33
Consensus MFE -24.02
Energy contribution -23.50
Covariance contribution -0.52
Combinations/Pair 1.19
Mean z-score -2.01
Structure conservation index 0.85
SVM decision value 1.75
SVM RNA-class probability 0.975228
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4100451 107 - 22224390
UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCAGUGAACACAUUUCCCAGGGCUGGGAAAACAGCCCAUUUCAUUGGCAUAUUUAU--UUUUUUCCCAUUGG
.((((((....))))))....................((((((......(((((((....)))))))...(((.........)))........--........)))))) ( -30.10)
>DroSec_CAF1 112228 106 - 1
UUCGCCCAGACGGGCCAUCAGUUUUCCACACCCCCAUCCAGUGAGCACAUUUCCCAGGGCUGACAAAACAGUCCAUUUCAUUGGCAUAUUUAU--UU-UUUCCCAUUGG
...((((....))))......................((((((((...........((((((......))))))..)))))))).........--..-........... ( -20.72)
>DroSim_CAF1 113889 106 - 1
UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCACUGAGCACAUUUUCCAGGGCUGGCAAAACAGCCCAUUUCAUUGGCAUAUUUAU--UU-UUUCCCAUUGG
.((((((....))))))(((((..((........))...)))))((.((.......((((((......)))))).......))))........--..-........... ( -30.44)
>DroEre_CAF1 118567 101 - 1
UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCGCUGAACACAUUUGCCAGGGCUGGGA-AACAGCCCAUUUCAUUGGCAUAUU------U-UUUUCCACUGG
.((((((....))))))(((((..((........))...))))).......(((((((((((...-..)))))).......)))))....------.-........... ( -32.61)
>DroYak_CAF1 111870 107 - 1
UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCACAUACACAAAACACGUUUUCCAGGGCUGGGA-AACAGCCCAUUUCAUUGGCAUAUUUCUCUUU-UUUCCCGUUGG
.((((((....))))))...((((((..............))))))..........((((((...-..))))))....((.(((.............-....))).)). ( -27.77)
>consensus
UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCACUGAACACAUUUCCCAGGGCUGGGAAAACAGCCCAUUUCAUUGGCAUAUUUAU__UU_UUUCCCAUUGG
.((((((....))))))...((((..................))))..........((((((......))))))....((.(((..................))).)). (-24.02 = -23.50 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:31 2006