Locus 1368

Sequence ID X_DroMel_CAF1
Location 4,100,305 – 4,100,397
Length 92
Max. P 0.887082
window2176

overview

Window 6

Location 4,100,305 – 4,100,397
Length 92
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 81.00
Mean single sequence MFE -14.95
Consensus MFE -8.02
Energy contribution -7.90
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -2.72
Structure conservation index 0.54
SVM decision value 0.94
SVM RNA-class probability 0.887082
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4100305 92 + 22224390
AAUGGGGUAAAUCCUACGAAAAA-AAAAAAA-----ACAAACUUUUGGGGCAACUUUUUUUGGUCAAACAAAAAAAAACAAAAGAACAGUAGCGAAAA
..(((((....))))).......-.......-----.....((((((((....))(((((((......)))))))...)))))).............. ( -14.10)
>DroSec_CAF1 112080 94 + 1
AAUGGGGUAAGUCCUACGAAAAA-AAAAAUAAAGGCACAAACUUUUGGGCCAACUUUUUUUGGUCAAACAAA---AAAGAAAAGAACAGUAACGAAAA
..(((((....)))))((.....-.........(((.(((....))).)))...((((((((......))))---)))).............)).... ( -14.50)
>DroSim_CAF1 113739 96 + 1
AAUGGGGUAAAUCCUACGAAAAAAAAAAAUAAAGGCACAAACUUUUGGGCCAACUUUUUUUGGUCAAACAAAA--AAAGAAAAGAACAGUAACGAAAA
..(((((....)))))((...............(((.(((....))).)))..(((((((((......)))))--)))).............)).... ( -18.00)
>DroYak_CAF1 111749 78 + 1
AAUGGGGUAAAUCCUACGAAAAA-----AUAAAGGCACAAACUUUUGGGCCAAUUUUUUUUGGUUGAAAAAAA---------------AUAAUGAAAA
..(((((....)))))(((((((-----(....(((.(((....))).)))...))))))))...........---------------.......... ( -13.20)
>consensus
AAUGGGGUAAAUCCUACGAAAAA_AAAAAUAAAGGCACAAACUUUUGGGCCAACUUUUUUUGGUCAAACAAAA__AAAGAAAAGAACAGUAACGAAAA
..(((((....)))))((...................(((....)))((((((......))))))...........................)).... ( -8.02 =  -7.90 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:30 2006