Locus 1362

Sequence ID X_DroMel_CAF1
Location 4,074,512 – 4,074,615
Length 103
Max. P 0.514457
window2167

overview

Window 7

Location 4,074,512 – 4,074,615
Length 103
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 84.91
Mean single sequence MFE -30.80
Consensus MFE -19.36
Energy contribution -19.44
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.63
SVM decision value -0.04
SVM RNA-class probability 0.514457
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4074512 103 + 22224390
GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUCGCUGGGCACCGGAAUAUCCUGGGUAUCUGGAUAUUCAG----GGGGCGGGGGGGUUUUUU
.(((((((.((...)).))))))).....(((..((((((....))))))..)))((.(....((((((((((....))))))))----))..).)).......... ( -34.20)
>DroSec_CAF1 87290 89 + 1
GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC-UGGGUAUCUGGAUAUUCGG----CGGGA-------------
.(((((((.((...)).)))))))....((((..(((.((....)).)))..))))(.(((((((-..(....)..))))))).)----.....------------- ( -28.90)
>DroSim_CAF1 86195 89 + 1
GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC-UGGGUAUCUGGAUAUUCGG----CGGGA-------------
.(((((((.((...)).)))))))....((((..(((.((....)).)))..))))(.(((((((-..(....)..))))))).)----.....------------- ( -28.90)
>DroEre_CAF1 86761 93 + 1
GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC-UGGGUAUCUGAAUAUCUGGAUAUCGGGG-------------
.(((((((.((...)).))))))).....(((..(((.((....)).)))..)))((.((.((((-..(((((....)))))..)))))).)).------------- ( -30.10)
>DroYak_CAF1 86135 93 + 1
AACACUGUGCAUGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCAGAAUAUC-UGGGUAUCUGUAUAUCUGGAUAUCUGGG-------------
.....(((.((.((((((((((.(((....))).)).....)))))))))).)))(((((.((((-..(((((....)))))..))))))))).------------- ( -31.90)
>consensus
GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC_UGGGUAUCUGGAUAUUCGG____CGGGA_____________
.(((((((.((...)).)))))))....((((..(((.((....)).)))..))))((((.(((.....)))))))............................... (-19.36 = -19.44 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006