Locus 1360

Sequence ID X_DroMel_CAF1
Location 4,069,167 – 4,069,259
Length 92
Max. P 0.652019
window2165

overview

Window 5

Location 4,069,167 – 4,069,259
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 85.08
Mean single sequence MFE -18.60
Consensus MFE -14.32
Energy contribution -15.43
Covariance contribution 1.11
Combinations/Pair 1.05
Mean z-score -2.14
Structure conservation index 0.77
SVM decision value 0.25
SVM RNA-class probability 0.652019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4069167 92 + 22224390
UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGGAAA
(((((...((((.....))))......((((.((((((.....--...))))))...)))).........-.....))))).............. ( -21.30)
>DroVir_CAF1 136467 84 + 1
UAUGAAACGUGAAACAAACACGGG-------GCGGAAAUA---CAUAAAUACGGAAAUACAAAAUAUGGGGCGCAAUUAUAAAUUUUAGACCAA-
(((((..((((.......))))..-------(((......---((((.....(......)....))))...)))..))))).............- (  -7.30)
>DroSec_CAF1 81983 92 + 1
UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGU-AGCAAUUAUAAAAUUUACAGCAAA
..((..((((((.....))))......((((.((((((.....--...))))))...)))).......))-..)).................... ( -21.60)
>DroSim_CAF1 80911 92 + 1
UAUGAAACGUGUGGCAAACACAAAAAGCGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGCAAA
........((((.....)))).......((((((((((.....--...))))))....((..........-.))..............))))... ( -21.20)
>DroEre_CAF1 81267 92 + 1
UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGCAAA
(((((...((((.....))))......((((.((((((.....--...))))))...)))).........-.....))))).............. ( -21.30)
>DroYak_CAF1 80917 91 + 1
UAUGAAACGUGUGGCAAACACAAAAAACGUUGCCGCAGCACGA--CAACUGCGGAAGAACGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGCAA-
(((((...((((.....))))......((((.((((((.....--...))))))...)))).........-.....))))).............- ( -18.90)
>consensus
UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA__CAACUGCGGAAGAGCGAAAUAUUGA_AGCAAUUAUAAAAUUUACAGCAAA
(((((...((((.....))))......((((.((((((..........))))))...))))...............))))).............. (-14.32 = -15.43 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:20 2006