| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 524,319 – 524,497 |
| Length | 178 |
| Max. P | 0.994350 |
| Location | 524,319 – 524,417 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 88.52 |
| Mean single sequence MFE | -40.64 |
| Consensus MFE | -35.85 |
| Energy contribution | -35.29 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.994350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 524319 98 - 22224390 CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAACUCAGCU----CACAAUG--------GGGAAUCCCACACACGCCGCCUGCACCACAUCGAGGGGCAUCAAA ....(((.(((((..........(((((((((((((((.......)----)....((--------((....))))......))))))))))))).))))).)))...... ( -39.20) >DroSec_CAF1 10807 102 - 1 CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAACCCAACUCCUGCACAAUG--------GGGAAUCCCACACACGCCGCCUGCAGCACAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...((((((.((((............))--------))...))))))...))))))))........))))).)))...... ( -39.79) >DroSim_CAF1 11130 102 - 1 CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAGCCCAACUCCUGCACAAUG--------GGGAAUCCCACACACGCCGCCUGCAGCACAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...((((((.((((............))--------))...))))))...))))))))........))))).)))...... ( -39.79) >DroEre_CAF1 15876 110 - 1 CAAAGUUGUUCGAGAUACCCAAGGUGGUGCAGGUGGGGGUCCAAAUCCUGCAGAAUGGGGGUGUGGGGAAUCCCACACACGCCGCCUCCAGCGAAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...(((((..(((..(((((.(.....).))).))..)))..)))))...))))))))........))))).)))...... ( -43.79) >consensus CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAACCCAACUCCUGCACAAUG________GGGAAUCCCACACACGCCGCCUGCAGCACAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...((((((.(((.......................)))..))))))...))))))))........))))).)))...... (-35.85 = -35.29 + -0.56)
| Location | 524,377 – 524,497 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.60 |
| Mean single sequence MFE | -31.78 |
| Consensus MFE | -23.70 |
| Energy contribution | -25.42 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 524377 120 - 22224390 UUAUAUAUAUUGUACUUCGUUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAAC .........................(((((.(((.(((((((...(((.(((((......)))))))).(((((..(((......)))...)))))......))))))).)))))))).. ( -35.40) >DroSec_CAF1 10869 107 - 1 UUAUAC-------------UUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAAC ......-------------......(((((.(((.(((((((...(((.(((((......)))))))).(((((..(((......)))...)))))......))))))).)))))))).. ( -35.40) >DroSim_CAF1 11192 107 - 1 UUAUAC-------------UUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAGC ......-------------......(((((.(((.(((((((...(((.(((((......)))))))).(((((..(((......)))...)))))......))))))).)))))))).. ( -35.40) >DroEre_CAF1 15946 106 - 1 -UAUAC-------------UUCAUAACACCAUUUUUCCCACCGAAACUCGCUGCAGUGCAUCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUACCCAAGGUGGUGCAGGUGGGGGU -.....-------------...............((((((((...((.((((...(((..((((((((..(((.....)).)..)))))).))..)))....))))))...)))))))). ( -26.80) >DroYak_CAF1 9651 102 - 1 UUAUAU-------------UUCAUAUUACAAGUUUCAGCAGCGAAAUUCGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGGCACAUCCAAGGUGGUGCAGGUG----- ......-------------....((((((........((((((.....)))))).((((.(.((((((..(((.....)).)..))))))).)))).......))))))......----- ( -25.90) >consensus UUAUAC_____________UUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAAC .........................((((.((((.(((((((.......(((((......)))))....(((((..(((......)))...)))))......))))))).)))))))).. (-23.70 = -25.42 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:52 2006