Locus 1356

Sequence ID X_DroMel_CAF1
Location 4,060,552 – 4,060,644
Length 92
Max. P 0.872105
window2159

overview

Window 9

Location 4,060,552 – 4,060,644
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 93.83
Mean single sequence MFE -21.12
Consensus MFE -17.40
Energy contribution -18.36
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.82
SVM decision value 0.88
SVM RNA-class probability 0.872105
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4060552 92 + 22224390
AUAUAUUUCAAAUAGCCAAAUUGGCAGCAUUUUAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG
..............(((.....)))((((((((((((.(((((....)))))((((....))))........))))))))))))........ ( -23.30)
>DroSec_CAF1 73593 90 + 1
--AUAUUUAAAAUAGCCAAAUUGGCAGCAUUUGAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG
--............(((.....))).((...((((((((((((....)))))((((....))))................))))))).)).. ( -20.70)
>DroSim_CAF1 72630 90 + 1
--AUAUUUAAAAUAGCCAAAUUGGCAGCAUUUUAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG
--............(((.....)))((((((((((((.(((((....)))))((((....))))........))))))))))))........ ( -23.30)
>DroEre_CAF1 73638 89 + 1
--AUAUUUAAAAUAGCCAAAUUGUCAGCAUUUU-GGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG
--............((((((.((....)).)))-))).(((((((((((...........))))))..(((.......))))))))...... ( -19.90)
>DroYak_CAF1 72946 89 + 1
--AUAUCUAAAAUAGCCAAACUGGCAACAUUUU-GGUAGAGACUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUACUUUACGCGG
--............((((((.((....)).)))-)((((((..((((((...........))))))..(((.......))).)))))))).. ( -18.40)
>consensus
__AUAUUUAAAAUAGCCAAAUUGGCAGCAUUUUAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG
..............(((.....)))((((((((((((..((..((((((...........))))))...)).))))))))))))........ (-17.40 = -18.36 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:15 2006