Locus 1355

Sequence ID X_DroMel_CAF1
Location 4,054,267 – 4,054,383
Length 116
Max. P 0.897603
window2158

overview

Window 8

Location 4,054,267 – 4,054,383
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 86.30
Mean single sequence MFE -35.32
Consensus MFE -26.60
Energy contribution -26.56
Covariance contribution -0.04
Combinations/Pair 1.26
Mean z-score -2.16
Structure conservation index 0.75
SVM decision value 1.00
SVM RNA-class probability 0.897603
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4054267 116 - 22224390
GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCGGGGAAUU-UUCGUAUUGCGAGGGGUUUGGGGUUCAGGGUUGAGCCCAUUAAAGGUCAACUGUGAA
.....((..((((((((.(((.(((....))).)))..(((((..(((((((..(...)-..))))..))).........((((((......)))))).))))))).))))))..)) ( -37.70)
>DroSec_CAF1 67597 109 - 1
GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCGGGGGAUU-UUCGUACUGCGUGGGGUUC-------GGGGUUCAGCCCAUUAAAGGUCAACUGUGAA
.....((..((((((((.(((.(((....))).)))......((((.(..((.((....-......)).))..).))))-------.(((.....)))......)).))))))..)) ( -39.60)
>DroSim_CAF1 64796 116 - 1
GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCAGGGUAUU-UUCGUACUGCGUGGGGUUCGGGGUUCGGGGUUCAGCCCAUUAAAGGUCAACUGUGAA
.....((..((((((((.(((.(((....))).)))......((((.(..(..(((((.-...)))))..)..).)))).(((((........)))))......)).))))))..)) ( -39.00)
>DroEre_CAF1 67365 103 - 1
GGAUUUUUGCGGUUGCUAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGUGGGGGAUUUUUCGUACUGCAAGGG--------------GUUCAGCCCAUUAAAGGUCAACUGUGAA
.....((..((((((((.(((.(((....))).)))..(((((....(((..(..((....))...)..))).((--------------(.....))).))))))).))))))..)) ( -28.50)
>DroYak_CAF1 65565 103 - 1
GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUGAAAUGUUUUGGGGAAUUUUUCGCACUGCAAGGG--------------GUUCAGCCCAUUAAAGGUCAACUGUGAA
.....((..((((((((.(((.(((....))).)))..(((((..(((..((.(((....))).))..)))..((--------------(.....))).))))))).))))))..)) ( -31.80)
>consensus
GGAUUUUUGCGGUUGCCAUUCGGACGGAAGUUGGAAAGUUUAGAACGUUGCGGGGAAUU_UUCGUACUGCGAGGGGUU_________GGGUUCAGCCCAUUAAAGGUCAACUGUGAA
.....((..((((((((.(((.(((....))).)))..(((((..(.((((((.............)))))).).............(((.....))).))))))).))))))..)) (-26.60 = -26.56 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:14 2006