Locus 1354

Sequence ID X_DroMel_CAF1
Location 4,053,154 – 4,053,248
Length 94
Max. P 0.557222
window2157

overview

Window 7

Location 4,053,154 – 4,053,248
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -24.58
Consensus MFE -21.96
Energy contribution -22.20
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.22
Structure conservation index 0.89
SVM decision value 0.05
SVM RNA-class probability 0.557222
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4053154 94 + 22224390
AUCCGACUAUCUGCUACCUGAUUUGAAGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCGGAUGGGUGGUCCUCGAAUCAAUCUCC
..................((((((((.((((.(((.((.(((..........)))((........)))).))).))))..))))))))...... ( -24.10)
>DroSec_CAF1 66489 94 + 1
AUCCGACUAUCUGCUACCUGAUUUGAUGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCUCGAAUCAAUCUCC
..................((((((((.(...((((.(((......(((((((.........)))))))..))).))))).))))))))...... ( -23.30)
>DroSim_CAF1 63695 94 + 1
AUCCGACUAUCUGCUACCUGAUUUGAUGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCUCGAAUCAAUCUCC
..................((((((((.(...((((.(((......(((((((.........)))))))..))).))))).))))))))...... ( -23.30)
>DroEre_CAF1 66291 91 + 1
AUCCGACUAUCUGCUACCUGAUUUGAUG---GCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCCCGAAUCAAUCUCC
..................(((((((..(---((((.(((......(((((((.........)))))))..))).)))))..)))))))...... ( -26.10)
>DroYak_CAF1 64476 91 + 1
AUCCGACUAUCUGCUACCUGAUUUGAUG---GCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCCCGAAUCAAUCUCC
..................(((((((..(---((((.(((......(((((((.........)))))))..))).)))))..)))))))...... ( -26.10)
>consensus
AUCCGACUAUCUGCUACCUGAUUUGAUGCCAGCCAGCCAGACAAAUGAAGACGUCGAUUUAGUUUUCAGAUGGGUGGUCCUCGAAUCAAUCUCC
..................((((((((.(...((((.(((......(((((((.........)))))))..))).))))).))))))))...... (-21.96 = -22.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:13 2006