| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,052,152 – 4,052,256 |
| Length | 104 |
| Max. P | 0.808717 |
| Location | 4,052,152 – 4,052,256 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.13 |
| Mean single sequence MFE | -31.36 |
| Consensus MFE | -25.14 |
| Energy contribution | -25.06 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4052152 104 + 22224390 AUCGGGCGGGUAUGCAAGACGAAUUUUCCGGCUGGCAACAUUUCGGAUAUUUCGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCCAAACAA-A ...(((((((((.(((((..(((...(((((.((....))..)))))...)))(....).....)))))))))))).....((((.....)))).))......-. ( -35.80) >DroSec_CAF1 65507 96 + 1 AUCGGGCGGGAAUGCAAGUCGAAUUUUCCGGCUGGCAACAUUU---------CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAAAA .(((((((((...((((((.(...(((((((.((....))..)---------))))))...).))))))..))))).....((((.....))))))))....... ( -34.30) >DroSim_CAF1 62731 96 + 1 AUCGGGCGGGAAUGCAAGACGAAUUUUCCGGCUGGCAACAUUU---------CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAAAA .(((((((((...(((((......(((((((.((....))..)---------))))))......)))))..))))).....((((.....))))))))....... ( -31.40) >DroEre_CAF1 65306 95 + 1 AUCGGGUGGGAAGGCAAGACGAAUUUUCCAGCUGGCAACAUUU---------CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAA-A .((((((.(((.((.((((....)))))).((.(((((((..(---------((....))).....))))))).))............))).)))))).....-. ( -27.90) >DroYak_CAF1 63492 95 + 1 AUCGGGUGGGAAGACAAGACGAAUUUUCCGGUAGGCAACAUUU---------CGGAGACGGCUACUUGUUGCCCGCGCAACAUCAAGAUUCUAUUCGAAACGA-A .((((((((((........((.......))(..(((((((..(---------((....))).....)))))))..)............)))))))))).....-. ( -27.40) >consensus AUCGGGCGGGAAUGCAAGACGAAUUUUCCGGCUGGCAACAUUU_________CGGAGACGGCCACUUGUUGCCCGCGCAACAUCGAGAUUCGAUUCGAAACAA_A ...(.(((((...(((((..((....)).(((.(....).............((....))))).)))))..))))).)...((((.....))))........... (-25.14 = -25.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:12 2006