Locus 1350

Sequence ID	X_DroMel_CAF1
Location	4,040,655 – 4,040,746
Length	91
Max. P	0.597348

overview

Window 2

Location	4,040,655 – 4,040,746
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	93.36
Mean single sequence MFE	-22.04
Consensus MFE	-20.00
Energy contribution	-20.00
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.14
Structure conservation index	0.91
SVM decision value	0.13
SVM RNA-class probability	0.597348
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4040655 91 + 22224390
CG--GAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA
((--(((.((((.((((...(((((...........))))))))).))))....(((....)))............)))))............ ( -20.90)
>DroSec_CAF1 54286 93 + 1
CGGCGAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA
((((((..((((.((((...(((((...........))))))))).))))..))))))..................((((....).))).... ( -24.90)
>DroSim_CAF1 51530 93 + 1
CGGGGAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA
(((.((..((((.((((...(((((...........))))))))).))))..)).)))..................((((....).))).... ( -21.10)
>DroEre_CAF1 54066 85 + 1
CG--GAUAUCUGUGUGAAAGAGUGCUU------UAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGCAAGUGACGACA
((--(((.((((.((((...(((((..------...))))))))).))))....(((....)))............)))))............ ( -21.20)
>DroYak_CAF1 52550 85 + 1
CG--GAUAUCUGUGUGAAAGAGUGCUU------CAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACGUAAAGUCCGAAAGUGACGACA
..--....((((.((((...(((((..------...))))))))).))))....(((....))).......((...((((....).))).)). ( -22.10)
>consensus
CG__GAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA
........((((.((((...(((((...........))))))))).))))....(((....)))............((((....).))).... (-20.00 = -20.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:08 2006