Locus 135

Sequence ID X_DroMel_CAF1
Location 523,957 – 524,056
Length 99
Max. P 0.500000
window191

overview

Window 1

Location 523,957 – 524,056
Length 99
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -22.31
Consensus MFE -18.47
Energy contribution -19.13
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.83
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 523957 99 - 22224390
AAGAUGGGAAGAUGGAUAGACAGACGGAUUGUUAGCUGCAUAGAUAGAAACAGGAAUAUAGGAUAUACAAAAAUCGUAUGUGUGUGCAGACUAGCAUCC-----
.........................((((.((((((((((((.............(((((.(((........))).))))).))))))).)))))))))----- ( -21.64)
>DroSec_CAF1 10448 96 - 1
AAG--------AUGGAUAGACAGACGGAUUUUUAGCUGCAUAGAUAGAAACAGGAAUAUGGGAUAUACAAAGAACGUAUGUGUGUGCAGCCUAGCAUCCUCGAU
...--------...........((.((((.((..((((((((........((......))..((((((.......)))))).))))))))..)).))))))... ( -21.40)
>DroSim_CAF1 10772 95 - 1
AAG--------AUGGAUAGACAGACGGAUUGUUAGCUGCAU-GAUAGAAACAGGAAUAUGGGAUAUACAAAGAACGUAUGUGUGUGCAGCCUAGCAUCCUCGAU
...--------...........((.((((.(((((((((((-........((......))(.((((((.......)))))).))))))).)))))))))))... ( -23.90)
>consensus
AAG________AUGGAUAGACAGACGGAUUGUUAGCUGCAUAGAUAGAAACAGGAAUAUGGGAUAUACAAAGAACGUAUGUGUGUGCAGCCUAGCAUCCUCGAU
.........................((((.(((((((((((.........((......))(.((((((.......)))))).))))))).)))))))))..... (-18.47 = -19.13 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:49 2006