Locus 1349

Sequence ID X_DroMel_CAF1
Location 4,038,135 – 4,038,234
Length 99
Max. P 0.999734
window2151

overview

Window 1

Location 4,038,135 – 4,038,234
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 96.75
Mean single sequence MFE -33.48
Consensus MFE -31.20
Energy contribution -31.56
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -2.56
Structure conservation index 0.93
SVM decision value 3.97
SVM RNA-class probability 0.999734
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4038135 99 + 22224390
UCGGGGCUGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU
..((((((((((((((((((.((...((((((((((......((((....))))....))))))))))....)).))))))))))...))))))))... ( -38.60)
>DroSec_CAF1 51634 98 + 1
-AGGGGCAGUUGGGGAGUGUGGGAAAAACGGGCGGCAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU
-.(((((..(((((((((((.((.......(((((((..((((((...........))))))..))))))).)).))))))))))).....)))))... ( -31.90)
>DroSim_CAF1 47892 98 + 1
-AGGGGCAGUUGGGGAGUGUGGGAAAAACGGGCGGCAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU
-.(((((..(((((((((((.((.......(((((((..((((((...........))))))..))))))).)).))))))))))).....)))))... ( -31.90)
>DroEre_CAF1 51450 98 + 1
-AGGGACAGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU
-((((....(((((((((((.((...((((((((((......((((....))))....))))))))))....)).)))))))))))......))))... ( -31.30)
>DroYak_CAF1 50004 98 + 1
-AGGGGCAGUUGGGGAGUGUGGGAUAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU
-.(((((..(((((((((((.((...((((((((((......((((....))))....))))))))))....)).))))))))))).....)))))... ( -33.70)
>consensus
_AGGGGCAGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAAUCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAGCUCUAAU
..(((((..(((((((((((.((...((((((((((......((((....))))....))))))))))....)).))))))))))).....)))))... (-31.20 = -31.56 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:07 2006