Locus 1347

Sequence ID X_DroMel_CAF1
Location 4,033,091 – 4,033,182
Length 91
Max. P 0.891827
window2149

overview

Window 9

Location 4,033,091 – 4,033,182
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.36
Mean single sequence MFE -23.92
Consensus MFE -19.20
Energy contribution -19.10
Covariance contribution -0.10
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.80
SVM decision value 0.97
SVM RNA-class probability 0.891827
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4033091 91 + 22224390
UUUCCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG
...(((((((((((.....)))))))..))))........(((((((((..((((((((........))))))))..).....)))))))) ( -25.80)
>DroSec_CAF1 46794 91 + 1
UUUCCAAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG
...(((.(((((((.....)))))))...)))........(((((((((..((((((((........))))))))..).....)))))))) ( -26.20)
>DroSim_CAF1 43047 91 + 1
UUUCCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG
...(((((((((((.....)))))))..))))........(((((((((..((((((((........))))))))..).....)))))))) ( -25.80)
>DroEre_CAF1 46571 83 + 1
UUUUCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUG-G-------CAAAUGGCGAUGG
.......(((((((.....)))))))..............((((((((..(((((((...........)-)-------))))))))))))) ( -22.00)
>DroYak_CAF1 45244 84 + 1
UUUUCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGG-------CAAAUGGCAAUGG
.......(((((((.....)))))))..................(((((..((((((((........))))-------))))..).)))). ( -19.80)
>consensus
UUUCCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG
...(((((((((((.....)))))))..))))........((((((((..(((((((....)))))))..((.....))....)))))))) (-19.20 = -19.10 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006