Locus 1346

Sequence ID X_DroMel_CAF1
Location 4,031,510 – 4,031,609
Length 99
Max. P 0.550974
window2148

overview

Window 8

Location 4,031,510 – 4,031,609
Length 99
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.22
Mean single sequence MFE -25.54
Consensus MFE -22.38
Energy contribution -23.38
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -1.28
Structure conservation index 0.88
SVM decision value 0.03
SVM RNA-class probability 0.550974
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4031510 99 + 22224390
GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---UGUUGUUGAAGGAAUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUGGCUAUGAAGGUAGCUGU
((.((((((..(((((((((.((((.......---)))))))))))))))))))))......((..((((.....))).)..))((((((....)))))).. ( -26.70)
>DroSec_CAF1 45235 99 + 1
GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---UGUUGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAAUCAAUUGAUGGCAAUGAAGGUAGCUGU
.(((((....((((((((((.((((.......---))))))))))))))(((..((....(((((((........)))))))...))..))))))))..... ( -26.80)
>DroSim_CAF1 41478 94 + 1
GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---CGUUGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUGGCAAUGAAGGUA-----
...(((((..((((((((((.(((........---.)))))))))))))))))).((((((.((..((((.....))).)..)).))))))......----- ( -29.20)
>DroEre_CAF1 44906 99 + 1
GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---UGUCGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUAGCAACGGGGGUAAUUGU
((.(((((..((((((((((..(((.......---))).))))))))))))))))).((((.((..((((.....))).)..)).))))............. ( -24.30)
>DroYak_CAF1 43660 102 + 1
GUACCUGAUGAUCUUUUAAUUAACACAUAGCCUCCUGAUGUUAAGGGAUUCAGGGCAUUGCAAUUGAGAGCUUAACCCAUUGAAAGCGAUGAAGGUAAUUCU
.(((((..(((.(((((((((....((..(((((((........)))).....)))..)).))))))))).)))...(((((....))))).)))))..... ( -20.70)
>consensus
GUACCUGAUGAUCUUUUAAUUAACACAUAGCC___UGUUGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUGGCAAUGAAGGUAACUGU
...(((((..((((((((((.(((............)))))))))))))))))).((((((.((..((((.....))).)..)).))))))........... (-22.38 = -23.38 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006