Locus 134

Sequence ID X_DroMel_CAF1
Location 523,551 – 523,671
Length 120
Max. P 0.718901
window190

overview

Window 0

Location 523,551 – 523,671
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.72
Mean single sequence MFE -36.03
Consensus MFE -25.98
Energy contribution -28.42
Covariance contribution 2.44
Combinations/Pair 1.12
Mean z-score -1.91
Structure conservation index 0.72
SVM decision value 0.39
SVM RNA-class probability 0.718901
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 523551 120 - 22224390
CCAACUGUUUCGUUGGUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGCAAGUGCAGCCAUUGGAGCAAGUGCCACACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU
((..((((((((((((.........)))))))(((((((.((((((.(..(((....)))..)))))))....)))))))...)))))((((............))))..))........ ( -41.10)
>DroSec_CAF1 10007 120 - 1
CCAACUGUUUCGUUGUUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGUAAGUGCAGCCAUUGGAGCAAGUGCCAUACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU
((....(((((((((((.....((((......(((((((.((((((.(..(((....)))..)))))))....))))))).......))))...)))))))))))(....)..))..... ( -37.42)
>DroSim_CAF1 10388 120 - 1
CCAACUGUUUCGUUGUUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGCAAGUGCAGCCAUUGGAGCAAGUGCCAUACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU
((....(((((((((((.....((((......(((((((.((((((.(..(((....)))..)))))))....))))))).......))))...)))))))))))(....)..))..... ( -39.62)
>DroEre_CAF1 9395 107 - 1
CCAACCGUUUCUUUGGUAGUGGCGCCCAACUAGUGGCGCGUCCAGUUGAAUGC----------UCU---GCGAGUGCCACACAAACAGGCGAAAAACAAUGAAAGCGCAAGGAGGAAGCC
......((((((((....((..((((......(((((((.(((((........----------.))---).))))))))).......))))....))........(....))))))))). ( -31.42)
>DroYak_CAF1 8817 110 - 1
CCAACUACUCCUUUGGUAGUGGCGCCUAAAGAGUGGCGCGUCCAAUUGAAUGC----------AUUGGAGCAAGUGGCACACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCC
.......((((((.....((((((((........))))).((((((.......----------))))))((.....)).)))......((((............))))))))))...... ( -30.60)
>consensus
CCAACUGUUUCGUUGGUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGCAAGUGCAGCCAUUGGAGCAAGUGCCACACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU
((....(((((((((.......((((......(((((((.((((((....(((....)))...))))))....))))))).......)))).....)))))))))(....)..))..... (-25.98 = -28.42 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:48 2006