| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,001,615 – 4,001,715 |
| Length | 100 |
| Max. P | 0.787339 |
| Location | 4,001,615 – 4,001,715 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.11 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -10.23 |
| Energy contribution | -11.03 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4001615 100 - 22224390 CACAGCUGCCACUGUCAGUGGGGGGCGGGGGUUGCACACAGCCCCCA-AACCCCACUGAAUACAAC-CUCCCUUUCU-CCUUUUUUUUUUUUUGUGCCUUCGG ..(((......)))(((((((((...((((((((....)))))))).-..))))))))).......-..........-......................... ( -35.30) >DroSec_CAF1 23296 85 - 1 CACAGCUGCCACUGUCAGUGGGC------GGGUGCACACAGCCCCCA-AACCCCACUGAAUAC----CGCCCAUUCU-CCUUUU---UUUU---UGCAUUCGA .......((.....((((((((.------(((.((.....)).))).-...))))))))....----.)).......-......---....---......... ( -21.70) >DroSim_CAF1 21673 91 - 1 CACAGCUGCCACUGUCAGUGGGC------GGGUGCACACAGCCCCCA-AACCCCACUGAAUACACC-CGCCCAGUCU-CCUUUUUUUUUUU---UGCAUUCGG .((((......))))...(((((------(((((....(((......-.......)))....))))-))))))....-.............---......... ( -24.12) >DroEre_CAF1 21545 83 - 1 CACAGCUGCCACUGCUAGUGGAGG---------GUACACAGCCCCCACAACCCCACUGAAUAC-----GCUCACUUUAUAUUUU---UUUG---UGCCUCUGC ..(((..((((......((((.((---------((.....))))))))........(((....-----..)))...........---..))---.))..))). ( -17.20) >DroYak_CAF1 21397 81 - 1 CACAGCUGCCACUGUCAGUGGAGG---------GUACGCAGCGCGCAAAACCCAACUGAAUACAACCCGCUCAG-------UUU---UUUU---UGCCUUUGC ....(((((.(((.((....)).)---------))..)))))..((((((...((((((...........))))-------)).---.)))---)))...... ( -22.00) >consensus CACAGCUGCCACUGUCAGUGGGGG_____GG_UGCACACAGCCCCCA_AACCCCACUGAAUACA_C_CGCCCAGUCU_CCUUUU___UUUU___UGCCUUCGC ..(((......)))(((((((((..........((.....))........)))))))))............................................ (-10.23 = -11.03 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:49 2006