Locus 1335

Sequence ID X_DroMel_CAF1
Location 4,000,845 – 4,000,959
Length 114
Max. P 0.909201
window2129

overview

Window 9

Location 4,000,845 – 4,000,959
Length 114
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 93.21
Mean single sequence MFE -22.94
Consensus MFE -19.36
Energy contribution -19.36
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.65
Structure conservation index 0.84
SVM decision value 1.06
SVM RNA-class probability 0.909201
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4000845 114 + 22224390
AUUGGUUGCUUUCAUGUGAAGCCUGUUAACGAUUUUAACGACAAAAUGU---CCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUCGAA
....(((((((((((((((((((.(((((((........(((.....))---)))))))).).)))))))))))))....)))))................................ ( -23.00)
>DroSec_CAF1 22566 115 + 1
AUUGGUUGCUUUCAUAUGAAGCCUGUUAAC-AUUUUAACGACAAGUUGUCGUUCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUC-AA
....(((((((((((((((((((.((((((-.....((((((.....)))))).)))))).).)))))))))))))....))))).............................-.. ( -27.10)
>DroSim_CAF1 20891 115 + 1
AUUGGUUGCUUUCAUAUGAAGCCUGUUAAC-AUUUUAACGACAAGUUGUCGUCCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUC-AA
....(((((((((((((((((((.((((((-......(((((.....)))))..)))))).).)))))))))))))....))))).............................-.. ( -25.90)
>DroEre_CAF1 20715 111 + 1
AUUGGUUGCUUUCAUGUGAAGCCUGUUAAC-AUUUUAACGACAACUUGU---CCGUUGAUUGCGUUUUAUGUGAAAUAAUGUAACAAUUAAAAAUCAUU-AUUUUCCUCUUUUG-AA
....((((((((((((((((((.((((((.-...)))))).((((....---..)))).....)))))))))))))....)))))..............-..............-.. ( -20.30)
>DroYak_CAF1 20619 111 + 1
AUUGGUUGCUUUCAUGUGAAGCUUGUUAAC-AUUUUAACGACAACUUGU---CCGUUGAUUGCAUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUU-AUUUUCCUCUUUUG-AA
....(((((((((((((((((((((((((.-...)))))))((((....---..))))...))..)))))))))))....)))))..............-..............-.. ( -18.40)
>consensus
AUUGGUUGCUUUCAUGUGAAGCCUGUUAAC_AUUUUAACGACAACUUGU___CCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUC_AA
....(((((((((((((((((((.((((((.......((((....)))).....)))))).).)))))))))))))....)))))................................ (-19.36 = -19.36 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:48 2006