Locus 1331

Sequence ID X_DroMel_CAF1
Location 3,985,897 – 3,985,991
Length 94
Max. P 0.529419
window2122

overview

Window 2

Location 3,985,897 – 3,985,991
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.13
Mean single sequence MFE -18.53
Consensus MFE -5.37
Energy contribution -5.32
Covariance contribution -0.05
Combinations/Pair 1.40
Mean z-score -2.08
Structure conservation index 0.29
SVM decision value -0.01
SVM RNA-class probability 0.529419
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3985897 94 - 22224390
----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AAAU----CCAUUCAUAAUUCGCAUUCAAAUGC-GAAAUUCACCACACCACACCACA--ACUCUCGCCAG
----.(((((..(((.(((.((.....((((((..---------------..))----).........(((((((....))))-)))..)))....)).))).))).--..))))).... ( -18.20)
>DroSec_CAF1 8053 96 - 1
----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AAAU----CCAUUCAUAAUUCGCAUUCAAAUGC-GAAAUUCACCACACCAUACCACCACACUCUCGCCAG
----.(((((..((((.((.((.....((.(((..---------------..))----))).......(((((((....))))-)))..............)).)).))))))))).... ( -17.90)
>DroSim_CAF1 5887 96 - 1
----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AAAU----CCAUUCAUAAUUCGCAUUCAAAUGC-GAAAUUCACCACACCAUACCACCACACUCUCGCCAG
----.(((((..((((.((.((.....((.(((..---------------..))----))).......(((((((....))))-)))..............)).)).))))))))).... ( -17.90)
>DroEre_CAF1 5818 83 - 1
----UCGGGAUCGUAUUGUCGUCCCUCUGAGAUCA---------------AAAC----CCACUCUUAAUUCGCAUUCAAAUGC-GAAGUUCACCAC-------------ACUCUCGUCAG
----..((((.((......))))))...((((...---------------....----..........(((((((....))))-)))((.....))-------------..))))..... ( -17.80)
>DroYak_CAF1 5848 87 - 1
----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AACCGUAAUCAUUCUUCAUUCGCAUUCAAAUGC-GAGGUUCACCAC-------------ACUCUCGUCAG
----.(((((..((((.((.(..((((.((((...---------------............)))).....((((....))))-))))..))).))-------------))))))).... ( -21.06)
>DroAna_CAF1 6477 108 - 1
AAUAUUUAACGCGUGUUAUUGUCCCACCAAAAAAAACAACAAGAAAACAGAAAU----UCAUUCACAUGGCGAAUUCAAAUGCCGAAAUUCACCACGA------AGA--GCGCGCGCAAG
.........((((((((....((...................(((........)----)).......(((.((((((.......).))))).))).))------..)--))))))).... ( -18.30)
>consensus
____UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA_______________AAAU____CCAUUCAUAAUUCGCAUUCAAAUGC_GAAAUUCACCACAC______AC___ACUCUCGCCAG
.....(((((........(((......)))......................................(((((((....)))).)))........................))))).... ( -5.37 =  -5.32 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:42 2006