Locus 133

Sequence ID X_DroMel_CAF1
Location 522,699 – 522,810
Length 111
Max. P 0.880040
window189

overview

Window 9

Location 522,699 – 522,810
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.53
Mean single sequence MFE -35.98
Consensus MFE -21.40
Energy contribution -23.64
Covariance contribution 2.24
Combinations/Pair 1.04
Mean z-score -2.84
Structure conservation index 0.59
SVM decision value 0.91
SVM RNA-class probability 0.880040
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 522699 111 + 22224390
AAUCCCUAGCUGGCUUACACCCGGCCAUCCCGUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC---------
........(((((.......)))))....(((((((((.((......)))).)))))...(((((((((.(((...................))).)))))))))...)).--------- ( -35.91)
>DroSec_CAF1 9162 110 + 1
AAUCUCUGGCUGGCUUACACCCGGCC-CCCAGUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC---------
.......((((((.......))))))-.((((((((((.((......)))).)))))...(((((((((.(((...................))).)))))))))..))).--------- ( -39.91)
>DroSim_CAF1 9544 110 + 1
AAUCUCUGGCUGGCUUACACCCGGCC-CCCAGUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC---------
.......((((((.......))))))-.((((((((((.((......)))).)))))...(((((((((.(((...................))).)))))))))..))).--------- ( -39.91)
>DroEre_CAF1 8556 95 + 1
AAUCUCUGGCUGGCUUACCC----------------CCACUUUUCCGGGGGAGCGCCUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUCGCUAAGGCCAUGGC---------
............(((..(((----------------((........))))))))(((...((((((((..(((...................)))..))))))))...)))--------- ( -32.51)
>DroYak_CAF1 7936 104 + 1
AAUCUCUGGCUGGCUUACCC----------------CCGCUUUUCCGGAGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUCGCUGAGACCAUGGCUCCUUCUCC
..(((((((..(((......----------------..)))...)))))))...((...((((.(((((((((........................)))))).))).))))...))... ( -31.66)
>consensus
AAUCUCUGGCUGGCUUACACCCGGCC__CC_GUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC_________
........(((.((((...(((((....................))))).))))......(((((((((.(((...................))).)))))))))...)))......... (-21.40 = -23.64 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:46 2006