| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,970,615 – 3,970,720 |
| Length | 105 |
| Max. P | 0.757203 |
| Location | 3,970,615 – 3,970,720 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.34 |
| Mean single sequence MFE | -44.00 |
| Consensus MFE | -28.40 |
| Energy contribution | -27.85 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3970615 105 + 22224390 A---GCGAGGAGACGCUGCCGAGUCCCAA------CUCCAUAUCGAUGCAACAGCUGGAAACAUGCAACGACAUCGAGGCGGCCAUCAUAGCCGCAGCCCGUGCUGCCGCUGCU (---(((((....)((((((((((....)------)))....((((((.....((((....)).)).....))))))))))))..))..(((.(((((....))))).)))))) ( -42.40) >DroPse_CAF1 26354 105 + 1 AGUAGUGAAGAGCCGCUGCCGAAUGU---------CCCCAUCUCCAUGCAACAGUUGGAGACCUGCAAUGACAUUGAGGCGGCCAUCAUAGCCGCUGCCCGGGCCGCGGCCGCG ....(((..((...((((((.(((((---------(..((((((((.((....))))))))..))....))))))..))))))..))...(((((.((....)).)))))))). ( -42.30) >DroEre_CAF1 21173 105 + 1 A---GCGAGGAGACGCUGCCGAGUCCCAA------CUCCAUAUCGAUGCAACAGCUGGAAACGUGCAACGACAUCGAGGCGGCCAUCAUAGCUGCGGCCCGUGCUGCCGCUGCU (---(((((....)((((((((((....)------)))....((((((.....((((....)).)).....))))))))))))..))..(((.(((((....))))).)))))) ( -41.00) >DroYak_CAF1 20645 105 + 1 A---GCGAGGAGACGCUGCCGAGUCCCCA------CUCCAUAUCGAUGCAACAGUUGGAAACGUGCAACGAUAUCGAGGCGGCUAUCAUAGCCGCGGCCCGUGCUGCCGCUGCU (---(((.(....)((.((((.(((....------(((.((((((.((((.....((....)))))).)))))).)))(((((((...)))))))))).)).)).))))))... ( -43.80) >DroAna_CAF1 22977 108 + 1 A---GCGAGGAGAUGCUGCCC---UCCAAUGUGGCCGCCAUCUCCAUGCAACAGCUGGAGACGUGCAACGACAUCGAGGCGGCCAUCAUAGCCGCUGCCCGGGCAGCUGCCGCC .---(((.((((........)---))).(((((((((((.((((((.((....)))))))).......((....)).)))))))).))).((.(((((....))))).))))). ( -52.40) >DroPer_CAF1 25865 105 + 1 AGUAGUGAGGAGCCGCUGCCGAAUGU---------CCCCAUCUCCAUGCAACAGUUGGAGACCUGCAAUGACAUUGAGGCGGCCAUCAUAGCCGCUGCCCGGGCCGCGGCCGCA ....(((..((...((((((.(((((---------(..((((((((.((....))))))))..))....))))))..))))))..))...(((((.((....)).)))))))). ( -42.10) >consensus A___GCGAGGAGACGCUGCCGAGUCCCAA______CUCCAUAUCCAUGCAACAGCUGGAAACGUGCAACGACAUCGAGGCGGCCAUCAUAGCCGCUGCCCGGGCUGCCGCCGCU ....(((..((...((((((..........................((((.....((....)))))).((....)).))))))..))...((.(((((....))))).))))). (-28.40 = -27.85 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:39 2006