| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,965,717 – 3,965,823 |
| Length | 106 |
| Max. P | 0.551698 |
| Location | 3,965,717 – 3,965,823 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.57 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3965717 106 + 22224390 -----UCACGUCUUUUACGCCUGCAGCAAAUGCUCAAAAAGGCUGAGUACGACGAAGAGAUCUCUUAUCGUGCCAUCAAAUCCUGCCUCACAAUCAACCCAUCCGCACUAA -----(((.(((((((.....((.(((....)))))))))))))))((((((..((((....)))).))))))...................................... ( -18.70) >DroPse_CAF1 20887 106 + 1 -----CCAAUCCAAUUUUGUGUGCAGCAAAUGCUCAAAAAGGCUGAGUACGACGAAGAGAUCUCUUAUCGUGCCAUUAAAUCCUGCCUCACACUCAACCCAACCACUCUAG -----.............(((((..(((...(((......)))((.((((((..((((....)))).))))))))........)))..))))).................. ( -21.70) >DroWil_CAF1 16195 98 + 1 -----UUUCUUGUAUUA-----UCAGCAAAUGCUUAAAAAGGCUGAGUACGACGAGGAGAACUCGUAUCGUGCCAUCAAAACCUGCCUCACCCGCAACACAAACUCA---U -----....((((....-----(((((...(........).)))))((((((((((.....))))..))))))..........(((.......)))..)))).....---. ( -19.10) >DroYak_CAF1 15879 110 + 1 UUCAUUUACAUCUAC-AACCCUGCAGCAAAUGCUCAAAAAGGCUGAGUACGACGAGGAGAUCUCUUAUCGUGCCAUCAAAUCCUGCAUCACACUCAACCCAUCCGCACUAA ...............-.....(((((.....(((......)))((.((((((..(((.....)))..)))))))).......)))))........................ ( -18.60) >DroAna_CAF1 18051 106 + 1 -----UCAUCUCAUUUCCUUCUCCAGCAAAUGCUCAAGAAGGCCGAGUACGACGAGGAGAUCUCUUAUCGUGCCAUCAAAACCUGCCUCACACUCAAUCCAUCGGCUUUAG -----............(((((..(((....)))..)))))(((((((((((..(((.....)))..))))))..........((.....)).........)))))..... ( -25.20) >DroPer_CAF1 20406 106 + 1 -----CCAAUCCAAUUUUGUGUGCAGCAAAUGCUCAAAAAGGCUGAGUACGACGAAGAGAUCUCUUAUCGUGCCAUUAAAUCCUGCCUCACACUCAACCCAACCACUCUAG -----.............(((((..(((...(((......)))((.((((((..((((....)))).))))))))........)))..))))).................. ( -21.70) >consensus _____UCACUUCAAUUACGUCUGCAGCAAAUGCUCAAAAAGGCUGAGUACGACGAAGAGAUCUCUUAUCGUGCCAUCAAAUCCUGCCUCACACUCAACCCAACCGCACUAG ......................((((.....(((......))).(.((((((..((((....)))).)))))))........))))......................... (-13.30 = -13.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:37 2006