Locus 1326

Sequence ID X_DroMel_CAF1
Location 3,962,409 – 3,962,499
Length 90
Max. P 0.550098
window2116

overview

Window 6

Location 3,962,409 – 3,962,499
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -21.53
Consensus MFE -20.03
Energy contribution -19.39
Covariance contribution -0.64
Combinations/Pair 1.12
Mean z-score -1.10
Structure conservation index 0.93
SVM decision value 0.03
SVM RNA-class probability 0.550098
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3962409 90 + 22224390
GAGUGCGCAGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA
...(((((.....(((((((...((((((((((......................))))))))))...))).......)))).))))).. ( -19.86)
>DroSec_CAF1 12547 90 + 1
GAGUGCGCGGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA
...(((((.(((((((.(((...((((((((((......................))))))))))...)))..))))).))..))))).. ( -20.35)
>DroSim_CAF1 12729 90 + 1
GAGUGCGCGGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUUAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA
...(((((.(((((((.(((...((((((((((......................))))))))))...)))..))))).))..))))).. ( -20.35)
>DroEre_CAF1 12781 90 + 1
GAGUGCGUGGCUAUGUGCUCCCUUCUUUUCAGUUGCUAAACCAAAAAAGAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGCAUA
..((((.((..(((((.(((...((((((((((......................))))))))))...)))..)))))..)).))))... ( -23.55)
>DroYak_CAF1 12678 90 + 1
GAGUGCGCGGCUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAGAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGCAUA
..((((((..((.(((((((.((((((((((((......................))))))))))..)).))...))))).)))))))). ( -23.55)
>consensus
GAGUGCGCGGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA
...(((((..((.(((((((.((((((((((((......................))))))))))..)).))...))))).))))))).. (-20.03 = -19.39 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:36 2006