Locus 1323

Sequence ID X_DroMel_CAF1
Location 3,951,048 – 3,951,143
Length 95
Max. P 0.657762
window2111

overview

Window 1

Location 3,951,048 – 3,951,143
Length 95
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 80.76
Mean single sequence MFE -24.34
Consensus MFE -15.32
Energy contribution -16.55
Covariance contribution 1.23
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.63
SVM decision value 0.26
SVM RNA-class probability 0.657762
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3951048 95 - 22224390
--CACUGUGAAUUAGACACGAUUCAUUUAGCAGAGACACGAACCACAUCUAGCUGAUACAAACACCAUGCAAAAGCGCGGCAAUUUUAAACUUUGCU
--....(((((((......)))))))..(((((((...........(((.....))).......((.(((....))).))..........))))))) ( -16.40)
>DroSec_CAF1 1321 97 - 1
CACACUGCGAAUUUGGCGCAUUCUCGUUAGCGGAGACACGAACCCCAUAUAGCUGAUAUAACAACCUUGCGUGAGCGCGCCAAUUUUAAACUUCGCU
......(((((.(((((((......(((((((....)..(.....).....))))))...........((....)))))))))........))))). ( -28.50)
>DroSim_CAF1 1355 96 - 1
CACACUGCGAAUUUGGCGCAUUCUCGCUAGCGGAGACACAAAC-CCAUAUAGCUGAUACAACAACCUUGCGUGAGCGCGCCAAUUUUAAAAUUCGCU
......(((((((((((((......((((..((..........-))...))))...............((....)))))))).......))))))). ( -28.11)
>consensus
CACACUGCGAAUUUGGCGCAUUCUCGUUAGCGGAGACACGAACCCCAUAUAGCUGAUACAACAACCUUGCGUGAGCGCGCCAAUUUUAAACUUCGCU
......(((((.(((((((......((((((....................))))))...........((....)))))))))........))))). (-15.32 = -16.55 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:32 2006