Locus 1322

Sequence ID X_DroMel_CAF1
Location 3,939,106 – 3,939,201
Length 95
Max. P 0.987424
window2110

overview

Window 0

Location 3,939,106 – 3,939,201
Length 95
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 74.73
Mean single sequence MFE -20.86
Consensus MFE -15.33
Energy contribution -15.63
Covariance contribution 0.31
Combinations/Pair 1.23
Mean z-score -2.14
Structure conservation index 0.73
SVM decision value 2.08
SVM RNA-class probability 0.987424
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3939106 95 + 22224390
ACCCAUUCCC-------------AUUCGCCUUCCUCAACCCCUGCCC----CAUCCGCACCCA-CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA
..........-------------..................((((((----(...((((....-...))))...(((....))))).)))))..................... ( -22.20)
>DroSec_CAF1 55496 103 + 1
A----UUCCCAUUCC-CGUUCCAAUUCCCCUUCCCCAACCCCUGCCC----CAUCCGCACCCA-CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA
.----..........-.........................((((((----(...((((....-...))))...(((....))))).)))))..................... ( -22.20)
>DroSim_CAF1 45611 107 + 1
ACCCAUUCCCAUUCC-CGUUCCAAUUCCCCUUCCCCAACCCCUGCCC----CAUCCGCACCCA-CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA
...............-.........................((((((----(...((((....-...))))...(((....))))).)))))..................... ( -22.20)
>DroEre_CAF1 61660 83 + 1
AC-------------------------CCCUUCGCCAACCCCUGCCC----AAUCCGCACCCA-CCAUGCGAAUGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA
..-------------------------......((......((((((----....((((....-...))))..((((....))))).))))).........)).......... ( -19.16)
>DroYak_CAF1 60375 83 + 1
AC-------------------------CCCUUCACCAACCCCUGCCC----AAUCCGCACCCA-CCAUGCGUAUGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA
..-------------------------..............((((((----....((((....-...))))..((((....))))).)))))..................... ( -18.60)
>DroAna_CAF1 49503 108 + 1
C----CUCCCAGCCCCCACUCCGGGACACC-UCCCCACCCCCUUUUUUUAGUAUAUGCCUCCACCCAUGCCUCUUGCUAAGGGCGACGGCAGUCAAAAAUCGCAUAAAUUAAA
.----.................((((....-))))...........((((((.(((((.........((((..((((.....)))).))))..........))))).)))))) ( -20.81)
>consensus
AC___UUCCC_____________AUUCCCCUUCCCCAACCCCUGCCC____CAUCCGCACCCA_CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA
.........................................(((((.........((((........))))..((((....))))..)))))..................... (-15.33 = -15.63 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:31 2006