Locus 1318

Sequence ID X_DroMel_CAF1
Location 3,924,466 – 3,924,586
Length 120
Max. P 0.914581
window2102

overview

Window 2

Location 3,924,466 – 3,924,586
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.71
Mean single sequence MFE -33.68
Consensus MFE -23.51
Energy contribution -25.57
Covariance contribution 2.06
Combinations/Pair 1.06
Mean z-score -2.07
Structure conservation index 0.70
SVM decision value 1.10
SVM RNA-class probability 0.914581
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3924466 120 + 22224390
GUGCCUCGCUGCUGAAAAGAAUCCUGUGCAACUGUACUGUCUUGUUAACAGAACUGUUUUUCGGCGCGAUAAGUGCUUUGCACAGAUUGUGUGAACAAAGAUUUGAGCAGUGCUGUAAAU
.(((..(((((((.(((......((((((((..((((((((.((((((((....))))....)))).))).))))).)))))))).((((....))))...))).)))))))..)))... ( -38.70)
>DroSec_CAF1 41047 104 + 1
GUGCCUCGCUGCUGAAAAGAAUCCUGUGAAACUGUACUGCAUUGUUAACAGAACUGUUUUACGGCGCAACGAG----------------UGUGAAUAGAGAUUUCAGCAGUGCUGUAAAU
.(((..(((((((((((......(((((((((.((.(((.........))).)).)))))))))((((.....----------------))))........)))))))))))..)))... ( -33.00)
>DroSim_CAF1 31559 104 + 1
GUGCCUCGCUGCUGAAAAGAAUCCUGUGCAACUGUACUGUAUUGUUAACAGAACUGUUUUACGGCGCAACGAG----------------UGUGAAUAGAGAUUUCAGCAGUGCUGUAAAU
.(((..(((((((((((......(((((.(((.((.((((.......)))).)).))).)))))((((.....----------------))))........)))))))))))..)))... ( -31.20)
>DroEre_CAF1 47113 114 + 1
GUGCCUCGCUGCUGAGAAGAAUCCUGUGAAACUGUACUGUAUUGUAAACAGAACUGUUUCUCGGCGCGAUUAGUGCUUUGCA--ACUUGUGUGAAC----AUGAAAACAGUGCUGUACAU
((((.((((.(((((((((....((((.......(((......))).)))).....)))))))))))))..((..((.....--..(..((....)----)..)....))..)))))).. ( -31.80)
>consensus
GUGCCUCGCUGCUGAAAAGAAUCCUGUGAAACUGUACUGUAUUGUUAACAGAACUGUUUUACGGCGCAACGAG________________UGUGAACAGAGAUUUCAGCAGUGCUGUAAAU
.(((..(((((((((((......(((((((((.((.((((.......)))).)).)))))))))((((.....................))))........)))))))))))..)))... (-23.51 = -25.57 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:24 2006