Locus 1317

Sequence ID X_DroMel_CAF1
Location 3,923,114 – 3,923,222
Length 108
Max. P 0.809019
window2101

overview

Window 1

Location 3,923,114 – 3,923,222
Length 108
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 58.21
Mean single sequence MFE -27.70
Consensus MFE -13.18
Energy contribution -13.74
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.48
SVM decision value 0.64
SVM RNA-class probability 0.809019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3923114 108 + 22224390
A--GCCAAAGAGCCGGAAACACGGAAUAGCCACCGGGAAAAUGGCGCUUUCCAAGCGGCCCCUUACAAAGGACACGCCGUUGUCCGAAAGCAAUGGCAACCACACCAAUG--------
.--((((....((((....).(((........))).......)))((((((..((((((.(((.....)))....))))))....))))))..)))).............-------- ( -35.30)
>DroPse_CAF1 54111 100 + 1
ACUGGCUUAGAGC---------AGAAGGGCCCACCGCAAGAUGGCGCUUUCCAAGCGUCCACUCACCAAGGACACGCCCUUGGCCGAGAGCAAUAGCAACAGCAACAAC---------
.((((((....((---------....(((((((.(....).))).(((.....))))))).(((.((((((......))))))..))).))...)))..))).......--------- ( -30.50)
>DroWil_CAF1 31342 82 + 1
---------------------------UGCAGGCAGAAACAUGGCGCUAUCCAAGCGUCCAUUGACCAAAGAAACAGCUUUGGUUGAGAGCAACAACAACAAUGGUGGA---------
---------------------------(((...........(((((((.....)))).)))(..(((((((......)))))))..)..))).................--------- ( -22.20)
>DroAna_CAF1 31690 104 + 1
A--ACUAAGAGUCCAAUUAGAGAGUAAAGC---------CAUGGCGCUAUCGAAGCGGCCCCUCACCAAGGACACCCCCCUGGUGGAGAGCAAUAUGAA---UACCAAUAAUUCCGGU
.--.((((........))))........((---------(....((((.....))))((.(..(((((.((......)).)))))..).))........---.............))) ( -23.00)
>DroPer_CAF1 41984 100 + 1
ACUGGCUUAGAGC---------AGAAGGGCCCACCACAAGAUGGCGCUUUCCAAGCGUCCACUCACCAAGGACACGCCCUUGGCCGAGAGCAAUAGCAACAGCAACAAC---------
.((((((....((---------....((.....))......(((((((.....)))).)))(((.((((((......))))))..))).))...)))..))).......--------- ( -27.50)
>consensus
A__GCCAAAGAGC_________AGAAGAGCCCACCGCAACAUGGCGCUUUCCAAGCGUCCACUCACCAAGGACACGCCCUUGGCCGAGAGCAAUAGCAACAACAACAAC_________
............................((............((((((.....)))).)).....((((((......))))))......))........................... (-13.18 = -13.74 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:23 2006