Locus 1316

Sequence ID X_DroMel_CAF1
Location 3,920,443 – 3,920,551
Length 108
Max. P 0.951130
window2100

overview

Window 0

Location 3,920,443 – 3,920,551
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 81.36
Mean single sequence MFE -28.70
Consensus MFE -24.05
Energy contribution -24.80
Covariance contribution 0.75
Combinations/Pair 1.04
Mean z-score -2.07
Structure conservation index 0.84
SVM decision value 1.41
SVM RNA-class probability 0.951130
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3920443 108 - 22224390
UGCGAUCCAGGCUAGCAAAUCCAUUAGCGCCAUCUGACGCAUUUGCCAGCAGGUGAUUCAGGUCACAUCCACAUCCACAUUCACAUCCGCCUGCCGAUCGCAACGAGA
((((((((((((..((..........))(..((((((..((((((....))))))..))))))..)......................)))))..)))))))...... ( -31.10)
>DroSec_CAF1 37076 102 - 1
UGCGAUCCAGGCUAGCAAACCCAUUAGCGCAAUCUGACGCAUUUUCCAGCAGGUGAUUCAGGUCACAUCCACAUCCA------CAUCCGCCUGCCGAUCGCAACGAGA
((((((((((((..((..........))(..((((((..(((((......)))))..))))))..)...........------.....)))))..)))))))...... ( -27.40)
>DroEre_CAF1 43102 89 - 1
UGCGAUCCAGGCUAGCAAACCCAUUAGCAC-ACCUGACGCAUUUCCAAGCAGGUGAUUCAGGUCACA------------------UCCGACUGCCGAUCGCAUCGAGA
(((((((..(((.................(-(((((.(..........))))))).....((((...------------------...))))))))))))))...... ( -26.40)
>DroYak_CAF1 42186 89 - 1
AGCGAUCCAGGCUGGCAAACCCAUUAGCAC-ACCUGACGCAUACUCCAGCAGGUGAUUCAGGUCACA------------------UCCGCCUCCUGAUCGCAUCGAGA
.((((((.(((..(((.............(-(((((.(..........))))))).....((.....------------------.))))).)))))))))....... ( -29.90)
>consensus
UGCGAUCCAGGCUAGCAAACCCAUUAGCAC_ACCUGACGCAUUUUCCAGCAGGUGAUUCAGGUCACA__________________UCCGCCUGCCGAUCGCAACGAGA
.(((((((((((..((..........))...((((((..(((((......)))))..)))))).........................)))))..))))))....... (-24.05 = -24.80 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:22 2006