| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,907,655 – 3,907,752 |
| Length | 97 |
| Max. P | 0.528252 |
| Location | 3,907,655 – 3,907,752 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -15.49 |
| Energy contribution | -15.68 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3907655 97 - 22224390 GG---GGCUUCCUGUUGCGGAAACGGAAACGCAAUGCCGACAGGGCUACA-UACG----AGU-------AUAAUCGAUUAAUUCGAUAUUAGAUUGAAUUUAUGGCCC----UUCU ((---(((.((((((((((....((....))...)).))))))))...((-((((----(..-------....)))...((((((((.....))))))))))))))))----)... ( -31.20) >DroVir_CAF1 100135 110 - 1 AAAAUGCCUUCCUGUUGCGGAAACGGAAACGCAAUGCCGACAGAGUUGCC-AGCGUGUAUAUAUGUACUAUAAUCGAUUAAUUCGAAAU-AGAUUGAAUUUAUGGCGA----UGCA ....(((....((((((((....((....))...)).)))))).((((((-((((((....))))).((((..((((.....)))).))-))..........))))))----)))) ( -28.70) >DroPse_CAF1 34578 96 - 1 UG---GGCUUCCUGUUGCGGAAACGGAAACGCAUUGCCGACAGAGUUACA-UACG----AGU-------AUAAUCGAUUAAUUCGAUAUUAGAUUGAAUUUAUGGGUC----C-CU .(---((((..(((((((((...((....))..))).)))))).....((-((((----(..-------....)))...((((((((.....))))))))))))))))----)-.. ( -24.70) >DroGri_CAF1 89183 104 - 1 AAAAUGUCUUCCUGUUGCGGAAACGGAAACGCAAUGCCGACAGAGUUGCCGAGCGCGCACAU-------AUAAUCGAUUAAUUCGAUAU-AGAUUGAAUUUAUGGCGC----UGAC .....(((.....((((((....)(....))))))((((.(......).)).))((((.(((-------(...((((((.((.....))-.))))))...))))))))----.))) ( -27.10) >DroAna_CAF1 10460 101 - 1 AG---GACUUCCUGUUGCGGAAACGGAAACGCAACGCCGACAGGACAACA-UACG----AGU-------AUAAUCGAUUAAUUCGAUAUUAGAUUGAAUUUAUUACCAACCGUUUA .(---(...((((((((((....((....))...)).)))))))).....-..((----(..-------....)))...((((((((.....)))))))).....))......... ( -25.40) >DroPer_CAF1 21988 96 - 1 UG---GGCUUCCUGUUGCGGAAACGGAAACGCAUUGCCGACAGAGUUACA-UACG----AGU-------AUAAUCGAUUAAUUCGAUAUUAGAUUGAAUUUAUGGGUC----C-CU .(---((((..(((((((((...((....))..))).)))))).....((-((((----(..-------....)))...((((((((.....))))))))))))))))----)-.. ( -24.70) >consensus AG___GGCUUCCUGUUGCGGAAACGGAAACGCAAUGCCGACAGAGUUACA_UACG____AGU_______AUAAUCGAUUAAUUCGAUAUUAGAUUGAAUUUAUGGCCC____U_CU ...........((((((((....((....))...)).))))))...............................(.((.((((((((.....)))))))).)).)........... (-15.49 = -15.68 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:18 2006