Locus 1311

Sequence ID X_DroMel_CAF1
Location 3,906,012 – 3,906,104
Length 92
Max. P 0.711946
window2094

overview

Window 4

Location 3,906,012 – 3,906,104
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 82.07
Mean single sequence MFE -24.45
Consensus MFE -14.67
Energy contribution -15.52
Covariance contribution 0.85
Combinations/Pair 1.21
Mean z-score -2.37
Structure conservation index 0.60
SVM decision value 0.38
SVM RNA-class probability 0.711946
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3906012 92 - 22224390
UCCAGAUAACGGACACAAAAGCGAACUUCACCCUGUGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA--ACUUGAAGAAACUCG
..........(((((((...(.(.....).)..)))))))..((((.(((((..((.((((((....))))))))..--.))))).)))).... ( -24.80)
>DroSec_CAF1 23228 92 - 1
UCCAGAUAACGGACACAAAAGCCAUCUUCACCCUGUGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA--AGUUGAAGAAACUCG
..........(((((((................)))))))((((((((((....)))((((((....))))))))))--)))............ ( -22.99)
>DroSim_CAF1 19935 92 - 1
UCCAGAUAACGGACACAAAAGCCAACUUCACCCUGAGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA--AGUUGAAGAAACUAG
(((.......))).(((((((...((((......))))...)))))))...((((..((((((....))))))....--))))........... ( -18.30)
>DroEre_CAF1 25431 91 - 1
UCCAGAUAACGGACACAAAGG-CAACUUCACCCUGUGUCCACUUUUGCCAAGACUGAGCAGUACUAGUGCUGCCAAA--AGUUGAGGAAACACG
(((.......((((((((((.-...))).....)))))))(((((((.((....)).((((((....))))))))))--)))...)))...... ( -28.40)
>DroYak_CAF1 26524 91 - 1
UCCAGAUAACGGACACAAAGG-CAACUUCACCCUGUGUCCACUUUUGCCAAGGCUGAGCAGUGCUAGUGCUGCCAAA--ACUUGAAGAAACUGG
.((((.....((((((((((.-...))).....)))))))..((((..((((..((.((((((....))))))))..--.))))..)))))))) ( -31.10)
>DroAna_CAF1 8170 77 - 1
UCCAGAUAACGGACACAAAGGAAACUUUCACCCUGUGUCCAUUUUUAUUCCA----------------UCUGCCAAGGAUAUUGGAGGA-CUCA
(((.......((((((((((....)))......)))))))........((((----------------....(....)....)))))))-.... ( -21.10)
>consensus
UCCAGAUAACGGACACAAAAGCCAACUUCACCCUGUGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA__AGUUGAAGAAACUCG
..........(((((((................))))))).((((.........((.((((((....))))))))........))))....... (-14.67 = -15.52 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:17 2006