Locus 1310

Sequence ID X_DroMel_CAF1
Location 3,905,525 – 3,905,619
Length 94
Max. P 0.602832
window2093

overview

Window 3

Location 3,905,525 – 3,905,619
Length 94
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -28.98
Consensus MFE -16.62
Energy contribution -17.46
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 0.57
SVM decision value 0.14
SVM RNA-class probability 0.602832
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3905525 94 - 22224390
GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUGUAC-GUAUAGUCCGGAUCUCGGACACUCGGAC--------ACUUGGACAACGGUCCGAGGA
((((((((.((((((.((((.(........).)))).))))))))-))...(((((.....)))))....))))--------.(((((((....))))))).. ( -35.10)
>DroSec_CAF1 22769 82 - 1
GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUG-----UAUAGUCCGGAUCUCGG--------AC--------ACUUGGACAACGGUCCGAGGA
.........((((((.((((.(........).)))).)))))-----)...(((((.....)))--------))--------.(((((((....))))))).. ( -25.90)
>DroSim_CAF1 19472 82 - 1
GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUG-----UAUAGUCCGGAUCUCGG--------AC--------ACUUGGACAACGGUCCGAGGA
.........((((((.((((.(........).)))).)))))-----)...(((((.....)))--------))--------.(((((((....))))))).. ( -25.90)
>DroEre_CAF1 24885 103 - 1
GUCCAUGUCGCAUGUCUGUCCCCUCAUCCUGCGGCACAUAUGUAUAGUCCAGUCCGGAUCUCGGACUCUUGGACUCUUUGACUCUUGGACUACGGAUUCUGGA
(((((.(((((((((.((((.(........).)))).))))))..(((((((((((.....)))))...))))))....)))...)))))............. ( -32.70)
>DroYak_CAF1 25983 82 - 1
GUCCAUGUCGCAUGUCUGUCCCCUCAUCCAGCGGCACAUAU---------AGUCUGGAUCUCGAACUCCCGGAC--------UCUUGGACUACGGAUUC----
(((((((((((.((..((......))..)))))))).....---------(((((((...........))))))--------)..))))).........---- ( -25.30)
>consensus
GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUG_____UAUAGUCCGGAUCUCGGAC_C__GGAC________ACUUGGACAACGGUCCGAGGA
(((((((((((.....((......))....))))))...............(((((.....)))))...................)))))............. (-16.62 = -17.46 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:16 2006