| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,896,359 – 3,896,449 |
| Length | 90 |
| Max. P | 0.595898 |
| Location | 3,896,359 – 3,896,449 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.23 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -15.72 |
| Energy contribution | -15.84 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.595898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3896359 90 + 22224390 UUACCUGCAUAUCAUUGCCACGCCCACCGUAAAUUAACAAUA----UUAUGGGGCGGCUGGUGGUUUUGC-UUGCUUUUCUUU------UCCUUUCGUUU--C ......(((...((..(((((((((.((((((..........----)))))).).)))..)))))..)).-.)))........------...........--. ( -20.90) >DroSec_CAF1 13709 96 + 1 UUACCUGCAUAUCAUUGCCACGCCCACCGCAAAUUAACAAUA----UUAUGGGGCGGCUGGUGGUUUUGC-UUGCUUUUCUUUUCAUUUUCCUUUAUUUU--U ......(((...((..((((((((..((.(((((.......)----)).)).)).)))..)))))..)).-.))).........................--. ( -18.60) >DroSim_CAF1 10842 100 + 1 UUACCUGCAUAUCAUUGCCACGCCCACCGCAACUCAGUCAUAAAAGUUAUGGGGCGGCUGGUGGUUUUGC-UUGCUUUUCUUUUCAUUUUCCUUUAUUUU--U ......(((...((..(((((((((.(((.((((..........)))).))).).)))..)))))..)).-.))).........................--. ( -20.70) >DroYak_CAF1 16207 98 + 1 UUACCUGCAUAUCAUUGCCACGCCCACCGCAAAUUAACAAUA----UUAUGGGGCGGUUGGUGGUUUUGCCUCUCUUCUCUAUUCAUU-UCACUUAUUUUCCU ......(((......)))..((((.(((((....(((.....----)))....))))).)))).........................-.............. ( -16.70) >consensus UUACCUGCAUAUCAUUGCCACGCCCACCGCAAAUUAACAAUA____UUAUGGGGCGGCUGGUGGUUUUGC_UUGCUUUUCUUUUCAUU_UCCUUUAUUUU__U ......(((...((..((((((((..((.((..................)).)).)))..)))))..))...)))............................ (-15.72 = -15.84 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:12 2006