Locus 1304

Sequence ID X_DroMel_CAF1
Location 3,889,315 – 3,889,416
Length 101
Max. P 0.850437
window2085

overview

Window 5

Location 3,889,315 – 3,889,416
Length 101
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 84.37
Mean single sequence MFE -29.65
Consensus MFE -19.59
Energy contribution -20.31
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -2.33
Structure conservation index 0.66
SVM decision value 0.79
SVM RNA-class probability 0.850437
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3889315 101 + 22224390
UUUCCUUUGGC-CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGCCCCCCC-----CACCAGCCAUUCGAAAAGUGAAAGGG-GGGAGGGUUUUU
........(((-(..(((..(((((((((((((((((((..((.......((....))......-----)).))))))))....)))))))))))-..)))))))... ( -34.92)
>DroSec_CAF1 6831 106 + 1
UUUCCUUUGGCCCAGCUUUUCCUUUUCACUUGAUGGUG--UUGUUAAUUUGCGAAAGCCCCCCUCCCUCCCCCCACCAUUCGAAAAGUGAAAGGGAGAGAGAGCUUUU
.............(((((((((((((((((((((((((--..........((....))...............)))))))....))))))))))))...))))))... ( -29.61)
>DroSim_CAF1 3901 106 + 1
UUUCCUUUGGC-CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGCCCCCCUCCCUUCCCCCACCAUUCGAAAAGUGAAAGGG-GGGAGGGUUUUU
......(((((-.(((....((...((....)).))..))).)))))...((....))......((((((((((..((((.....))))...)))-)))))))..... ( -31.10)
>DroEre_CAF1 7414 91 + 1
UUUCCUUUGGC-CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGGCCCC--------------CAUCCGAAAUGUGAAAGGG--GGAGGGCUUUU
........(((-(....(..(((((((((..(((((...(((((......)))))......)--------------))))......)))))))))--..).))))... ( -27.00)
>DroYak_CAF1 9294 91 + 1
UUUCCUUAGGC-CAGCUUUUCCUUUUCAUUUGAUGGUUGUUUGUUAAUUUGCGAAAGGCCCC--------------CAUCCAAAAUGUGAAAGGG--GGAGGGUUUUU
.......((((-(..(((..((((((((((((((((...(((((......)))))......)--------------))))..))))).)))))).--.)))))))).. ( -25.60)
>consensus
UUUCCUUUGGC_CAGCUUUUCCUUUUCACUUGAUGGUUGUUUGUUAAUUUGCGAAAGCCCCCC______C_CC__CCAUUCGAAAAGUGAAAGGG_GGGAGGGUUUUU
.............((((((((((((((((((((((((.............((....))................))))))....)))))))))))...)))))))... (-19.59 = -20.31 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:09 2006