| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 520,433 – 520,539 |
| Length | 106 |
| Max. P | 0.779458 |
| Location | 520,433 – 520,539 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.35 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -20.75 |
| Energy contribution | -21.25 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 520433 106 - 22224390 ACUCGAUUCAAGGCUCUUGAUA--------------UCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACACAAAUUCCAUCCCAGGAGCAACGCAGCACUCGAGUUGCCAUCGGAACAUUU ..(((((.....(((((((...--------------...((((((((((((((((......))).))))).)))).)))).)))))))...(((((......))))).)))))....... ( -26.30) >DroSec_CAF1 6687 106 - 1 ACUCCAUUCAAGGCUCUUGAUA--------------UCUGAUGAAUUGUGUUAUAAAUUGAUAUCUACACAAAUUCAAUCCCAGGAGCAACGCAGCACCCAGGUUGCCAUCGGAACAUCU ..(((.......(((((((..(--------------(....((((((((((.(((......)))..)))).))))))))..)))))))...(((((......)))))....)))...... ( -25.30) >DroSim_CAF1 7061 106 - 1 ACUCCAUUCAAGGCUCUUGAUA--------------UCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACACAAAUUCAAUCCCAGGAGCAACGCAGCACUCAGGUUGCCAUCGGAACAUCU ..(((.......(((((((..(--------------(....((((((((((((((......))).))))).))))))))..)))))))...(((((......)))))....)))...... ( -26.60) >DroEre_CAF1 6460 119 - 1 ACUCGAUUCAAGGCUCUUGAUAUCUGAUAUUUGAUAUCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACUCAAAUUCAAUCCCAGGAGCAGCGCAGCACUUAGGUUGCUA-CGGAACAUCU ..(((.......((((((((((((........))))))...((((((..((((((......))).)))...)))))).....))))))...(((((......)))))..-)))....... ( -26.30) >consensus ACUCCAUUCAAGGCUCUUGAUA______________UCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACACAAAUUCAAUCCCAGGAGCAACGCAGCACUCAGGUUGCCAUCGGAACAUCU ......(((...(((((((.................((....)).((((((((((......))).))))))).........)))))))...(((((......)))))....)))...... (-20.75 = -21.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:16 2006