Locus 13

Sequence ID X_DroMel_CAF1
Location 29,854 – 29,968
Length 114
Max. P 0.516132
window15

overview

Window 5

Location 29,854 – 29,968
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 94.15
Mean single sequence MFE -20.87
Consensus MFE -19.68
Energy contribution -19.13
Covariance contribution -0.55
Combinations/Pair 1.12
Mean z-score -1.48
Structure conservation index 0.94
SVM decision value -0.03
SVM RNA-class probability 0.516132
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 29854 114 - 22224390
UGGUACCACAUUUCGGAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGAUAUACAAAAAGAUCAAAAAUAAUAUAAUUUCGUUGGACUGGAGAGCCAGUGAUUUCGAA
...........(((((((.......(((((((((((((.....)))))...(((((..........)))))..........))))))))..(((((....)))))..))))))) ( -19.00)
>DroSec_CAF1 17163 114 - 1
UAUUAACGCAUUUCGAAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGACAUGCAAAAAGAUCAAAAAUAAUCUAACUUUGUUGGACUGGAGAGCCAGUGAUUUCGAA
.......((((.((((.....(((((((....(....)....)))))))..)))).))))....((((((.......((((((...))))))((((....)))))))))).... ( -21.80)
>DroSim_CAF1 16915 114 - 1
UAUUAACGCAUUUCGAAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGACAUGCAAAAAGAUCAAAAAUAAUCUAACUUUGUUGGACUGGAGAGCCAGUGAUUUCGAA
.......((((.((((.....(((((((....(....)....)))))))..)))).))))....((((((.......((((((...))))))((((....)))))))))).... ( -21.80)
>consensus
UAUUAACGCAUUUCGAAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGACAUGCAAAAAGAUCAAAAAUAAUCUAACUUUGUUGGACUGGAGAGCCAGUGAUUUCGAA
...........((((((((((((..(((....((((((.....)))))).)))..))))).......(((.......((((((...))))))((((....)))))))))))))) (-19.68 = -19.13 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006