| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,880,841 – 3,880,993 |
| Length | 152 |
| Max. P | 0.661081 |
| Location | 3,880,841 – 3,880,959 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.15 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -13.67 |
| Energy contribution | -13.51 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3880841 118 + 22224390 GGAUUUUCGCCA-AGAAGAAGGAGACAGCGAAAUAUUCAAAUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUGCUUGCGCUCUCCUUGUAGGCAUUU-UAUGGUUCUGUCU ((((....((((-.(((((((((((..((((((((((...(((((((((((((.......)))))))))))))..))))))..))))..)))))))(....).)))-).))))...)))) ( -29.00) >DroPse_CAF1 72225 113 + 1 CGAUUUGCGCCCCCAAAGAAGAAGACGGCGAAAUAUUCAAAUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUGCG------CUCCUCGUAGGCAUUU-UAUGGGUGUGUCU ......((((.((((.((((....((((((.((((((...(((((((((((((.......)))))))))))))..)))))).))------)....))).....)))-).)))).)))).. ( -28.40) >DroWil_CAF1 63590 105 + 1 CGAUUCUCGC-----------AAGACAUCGGAAUAUUCAAAUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGCUUUC---CGUCCAAACGUAGGCAUUU-UAUGGGUGUGUCU ((((..((..-----------..)).))))(((((((((.(((((((((((((.......)))))))))))))..(((((((..---(((....))).))))))).-..))))))).)). ( -25.30) >DroMoj_CAF1 93226 101 + 1 CGAUUUUCGC-----------AAGACAGCAAAAUAUUCAAAUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUGC--------UCUUCGUAGGCAUUUUUAUGUGUCUGUGU .......((.-----------(((((((((...(((....(((((((((((((.......)))))))))))))))).))))).--------))))))(((((((......)))))))... ( -22.70) >DroAna_CAF1 83835 115 + 1 GGAUUUUCGCCA-AGAACAA---GACAGCGAAAUAUUCAAAUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUUCGCGCUUUCUCCUCGUAGGCAUUU-UAUGGCUCUGUCU ((((....((((-.(((...---....((((((((((...(((((((((((((.......)))))))))))))..))))))))))((((.(.....).))))..))-).))))...)))) ( -30.70) >consensus CGAUUUUCGCC____AA_AA_AAGACAGCGAAAUAUUCAAAUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUGCG_____UCUCCUCGUAGGCAUUU_UAUGGGUCUGUCU .......................(((((....(((.....(((((((((((((.......)))))))))))))..((((((..................))))))..)))....))))). (-13.67 = -13.51 + -0.16)
| Location | 3,880,880 – 3,880,993 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 71.43 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -15.65 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3880880 113 + 22224390 AUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUGCUUGCGCUCUCCUUGUAGGCAUUUUAUGGUUCUGUCUAUAUUUGUGUCUGUCUGCGUGUUCACAGUGUGUA-- ..(((((((((((.......)))))))))))(((((.(((.(..(((((........(((((((..(((((......)))))...)))))))...)))))..)))).))))).-- ( -26.20) >DroWil_CAF1 63619 97 + 1 AUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGCUUUC---CGUCCAAACGUAGGCAUUUUAUGGGUGUGUCUGUGCGUAUGUCUUCUAGCCCC--------------- (((((((((((((.......))))))))))))).....(((...---....((.((((((((((.........))))))..)))).))......)))...--------------- ( -18.62) >DroAna_CAF1 83871 115 + 1 AUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUUCGCGCUUUCUCCUCGUAGGCAUUUUAUGGCUCUGUCUAUAUCUCUGUCUGUCUGCGUCUACUUAGUGUUCAGG (((((((((((((.......)))))))))))))..........(((((.......((((((((...(((((......)))))........)))))))).......)))))..... ( -23.04) >consensus AUGAAAAUUUAUGUUUGCAUUAUGAAUUUUUAUAUAGUGUUUCC_GCCCUCUCCUCGUAGGCAUUUUAUGGCUCUGUCUAUAUCUAUGUCUGUCUGCGUCU_C__AGUGU__A__ (((((((((((((.......)))))))))))))........................(((((((..(((((......)))))...)))))))....................... (-15.65 = -15.77 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:01 2006