| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,862,903 – 3,862,997 |
| Length | 94 |
| Max. P | 0.651405 |
| Location | 3,862,903 – 3,862,997 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 83.50 |
| Mean single sequence MFE | -23.95 |
| Consensus MFE | -18.07 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3862903 94 + 22224390 ------CUGAAAACUGAAUGCC---GAAAAAGCGAAAGA-GCCAAAAA-----UGUUGGCGUUAUCUUGGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCAAUGG ------..............((---(....((((((...-(((((...-----..))))).........((((..(((((....)))))..)))).))))))....))) ( -23.50) >DroPse_CAF1 50938 94 + 1 ------CUGAAAACUGAAAGCC---AAAAAAGCGAAAGA-GCCAAAAA-----CGUUGGCGUUAUCUUGGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCGAACU ------................---.....((((((...-(((((...-----..))))).........((((..(((((....)))))..)))).))))))....... ( -22.20) >DroEre_CAF1 44750 100 + 1 UGAAAACUGAAAACUGAAUGCC---GAAAAAGCGAAAGA-GCCAAAAA-----UGUUGGCGUUAUCUUGGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCGAAAG ......................---.....((((((...-(((((...-----..))))).........((((..(((((....)))))..)))).))))))....... ( -22.20) >DroYak_CAF1 40837 94 + 1 ------CUGAAAACUGAACGCC---GAGAAAGCGAAAGA-GCCAAAAA-----UGUUGGCAUUAUCUUGGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCAAAAA ------.........(((((.(---((((...(....).-(((((...-----..)))))....)))))((((..(((((....)))))..))))...)))))...... ( -27.80) >DroMoj_CAF1 63503 94 + 1 ------------GCUGCAGGCCUUUGGCAUUGCC--AGCCCCCAAAAAAUCGUUUUUGGCGUUAUCU-AGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCAAACU ------------((((((((((...))).))).)--)))..(((((((....)))))))........-.((((..(((((....)))))..)))).............. ( -25.80) >DroAna_CAF1 46893 94 + 1 ------CUGAAAACUGAAAGCC---GAAAAAGCGAAAGA-GCCAAAAA-----UGUUGGCGUUAUCUUGGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCAAUAG ------................---.....((((((...-(((((...-----..))))).........((((..(((((....)))))..)))).))))))....... ( -22.20) >consensus ______CUGAAAACUGAAAGCC___GAAAAAGCGAAAGA_GCCAAAAA_____UGUUGGCGUUAUCUUGGGCGAGAAUGAAAAGUCAUUACCGCCAUUCGUUCCAAAAG ..............................((((((....(((((..........))))).........((((..(((((....)))))..)))).))))))....... (-18.07 = -18.90 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:57 2006